View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1392_low_2 (Length: 679)
Name: NF1392_low_2
Description: NF1392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1392_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Complemental strand, 13138417 - 13137907
Alignment:
| Q |
8 |
aaacaaaggagggggatataaagccaaaacctccttagaatttaacaaacaaactcacacattcctgatttatttttagctataaggatgctttaataca |
107 |
Q |
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| T |
13138417 |
aaacaaaggagggggagataaagccaaaacctccttagaatttaacaaacaaactcacacattcttgatttatttttagctataaggatgctttaataca |
13138318 |
T |
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| Q |
108 |
attaggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13138317 |
attaggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggta |
13138218 |
T |
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| Q |
208 |
gccagaaagtacattgatgatacaatgtgcatacaattcttccctaaagagttgtattagatatcaatgtggcaagagaactttttcaatgaattttctt |
307 |
Q |
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| T |
13138217 |
gccagaaagtacactgatgatacaatgtgcatacaattcttccctaaagagttgtattagatatcaatgtggcaagagaactttttcaatgaattttctt |
13138118 |
T |
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| Q |
308 |
gtttctaaatctcatttgattttttgcaaaccaaactgagttgatgatgttgatcatagttgcagtaatcacaactttgcattgaggatggaccacatat |
407 |
Q |
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| T |
13138117 |
gtttctaaatctcatttgatttcttgcaaaccaaactgagttgatgatgttgatcatagttgcagtaatcacaactttgcattgaggatggaccacatat |
13138018 |
T |
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| Q |
408 |
cttgtaaggactggaaatgaagagttacatatagcatagatgcaaaccaacaccaaaggtttactgcataaatgcattcaaaaaattgatggaaaaatga |
507 |
Q |
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| T |
13138017 |
cttgtaagaattggaaatgaagagttacatatagcatagatgcaaaccaacaccaaaggtttactgcataaatgcattcaaaaaattgatggaaaaatga |
13137918 |
T |
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| Q |
508 |
ttcttcatgat |
518 |
Q |
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| T |
13137917 |
ttcttcatgat |
13137907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 514 - 587
Target Start/End: Complemental strand, 13137805 - 13137732
Alignment:
| Q |
514 |
atgatgttttttgatatcataggcttctttcaaagataattcacgtgaagtgatgtgtttccaaatcaacctat |
587 |
Q |
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| T |
13137805 |
atgatgttttttgaaatcataggcttctttcaaagataattcacgtgaagtgatgtgtttccaaatcaacctat |
13137732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 16472630 - 16472677
Alignment:
| Q |
9 |
aacaaaggagggggatataaagccaaaacctccttagaatttaacaaa |
56 |
Q |
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||||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
16472630 |
aacaaaggagggggacatcaagccaaaacctccttagaaattaacaaa |
16472677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 16473353 - 16473416
Alignment:
| Q |
333 |
gcaaaccaaactgagttgatgatgttgatcatagttgcagtaatcacaactttgcattgaggat |
396 |
Q |
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|||||||||||||| ||||| ||||| ||||| | |||||| ||||||||| | |||||||||| |
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| T |
16473353 |
gcaaaccaaactgatttgataatgtttatcatggctgcagtgatcacaactctacattgaggat |
16473416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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