View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1392_low_6 (Length: 423)
Name: NF1392_low_6
Description: NF1392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1392_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 46456664 - 46456374
Alignment:
| Q |
1 |
caacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaatacatcttcattttgctctttcaattattgaagccaattcaaaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456664 |
caacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaatacatcttcattttgctctttcaattattgaagccaattcaaaatattt |
46456565 |
T |
|
| Q |
101 |
cagcatacaaataaagatcttgtcgcgtcatcatgcctcaactttgagactatgatctaataaaggtggaagtaagttatcggccttgtttaaatttagt |
200 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46456564 |
cagaatataaataaagatcttgtcgcgtcatcatgcctcaactttgagactatgatctaataaaggtggaagtaagttatgggccttgtttaaatttagt |
46456465 |
T |
|
| Q |
201 |
aaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagggggtaaaatgatatcatcttctggaggtggtgcattaac |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456464 |
aaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagggggtaaaatgatatcatcttctggaggtggtgcattaac |
46456374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University