View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1392_low_9 (Length: 392)
Name: NF1392_low_9
Description: NF1392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1392_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 233 - 379
Target Start/End: Original strand, 14599032 - 14599178
Alignment:
| Q |
233 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
332 |
Q |
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| T |
14599032 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
14599131 |
T |
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| Q |
333 |
ctgaatcatctggaggccaataagcattgccaactccataggtacct |
379 |
Q |
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| T |
14599132 |
ctgaatcatctggaggccaataagcattgccaactccataggtacct |
14599178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 379
Target Start/End: Complemental strand, 14609478 - 14609336
Alignment:
| Q |
237 |
ttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcatctga |
336 |
Q |
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| T |
14609478 |
ttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttc |
14609379 |
T |
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| Q |
337 |
atcatctggaggccaataagcattgccaactccataggtacct |
379 |
Q |
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| T |
14609378 |
atcgtctggaggccaatatgcattgccaactccataggtacct |
14609336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 14598829 - 14598862
Alignment:
| Q |
30 |
atcactactaagcgaatagcaataagagccctgt |
63 |
Q |
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| T |
14598829 |
atcactaccaagcgaatagcaataagagccctgt |
14598862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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