View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13930_high_1 (Length: 476)
Name: NF13930_high_1
Description: NF13930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13930_high_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 607978 - 607546
Alignment:
| Q |
19 |
ttcaccctttatattatacattaatattactcatgctacttgatttttaattataagatttctcattttcacaaattcagttggggagaccttgcatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
607978 |
ttcaccctttatattatacattaatattactcatgctacttgatttttaattataagatttctcattttcacaaattcagttggggagaccttgcatggt |
607879 |
T |
|
| Q |
119 |
accaagtcaacaaaatcaaaatatataggatgccacctagatgatgaagatgattggcatcacttcaggaatggtattctatctcatttcactcaacttt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
607878 |
accaactcaacaaaatcaaaatatataggatgccacctagatgatgaagatgattggcatcacttcaggaatggtattctatctcatttcactcaacttt |
607779 |
T |
|
| Q |
219 |
tttcattccacttttataggatacaatcttaagatataagttcatatatcttgtattctgatttgtatcttgaagctgttcgcgctacaataagagaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
607778 |
tttcattccacttttataggatacaatcttaagacataagttcatatatcttgtattctgatttgtatcttgaagctgttcgcgctacaataagagaaac |
607679 |
T |
|
| Q |
319 |
gccaacgtctacctcgaggtacaaacaaaatcagtatactgttaagcatgccaattctcaattaaattccacaattgttttgatacaattcttttcaatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
607678 |
gccaacgtctacctcgaggtacaaacaaaatcagtatactgttaagcatgccaattctcaattaaattgcacaattgttttgatacaattcttttcaatc |
607579 |
T |
|
| Q |
419 |
atgttgttatagtaaagggaattctccatcacc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
607578 |
atgttgttatagtaaagggaattctccatcacc |
607546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Complemental strand, 43169541 - 43169508
Alignment:
| Q |
443 |
tccatcacccctagacaaaccacttgttggtatt |
476 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
43169541 |
tccatcaccactagacaaaccacttgttggtatt |
43169508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 41771766 - 41771867
Alignment:
| Q |
94 |
ttcagttggggagaccttgcatggtaccaagtcaacaaaatcaaaatatataggatgccacctagatgatgaagatgattggcatcacttcaggaatggt |
193 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||| ||||||||| |||||||| ||| ||||| ||||| || |||| |||||| ||||||||| |
|
|
| T |
41771766 |
ttcagttggggagaccatggttggtgccaacctcacaaagtcaaaatatgtaggatgcagccttgatgacgaagaagagtggcctcactttaggaatggt |
41771865 |
T |
|
| Q |
194 |
at |
195 |
Q |
| |
|
|| |
|
|
| T |
41771866 |
at |
41771867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University