View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13930_low_3 (Length: 273)
Name: NF13930_low_3
Description: NF13930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13930_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 101 - 247
Target Start/End: Complemental strand, 2319466 - 2319322
Alignment:
| Q |
101 |
gtacgatttaatgattagactaattgatggtgctacacatgtgtcatgacatattagatataaaagtcttgtatgaacatggaaaatatttaatagcatc |
200 |
Q |
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| T |
2319466 |
gtacgattgaatgattagactcattgatagtactacacatgtatcatgacat--tagatataaaagtcttgtgtgaacatggaaaatatttaatagcatc |
2319369 |
T |
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| Q |
201 |
atttatgaaggatacatgtttttctcctttgcatcattctttgaagg |
247 |
Q |
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| T |
2319368 |
atttatgaaggagacaagtttttctcctttgcatcattctttgaagg |
2319322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 2326298 - 2326143
Alignment:
| Q |
101 |
gtacgatttaatgattagactaattgatggtgctacacatgtgtcatgacatattagatataaaagtcttgtatgaacatggaaaatatt-taatagcat |
199 |
Q |
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| T |
2326298 |
gtacgatataatgattagactaattgatggtgctacacatgtgtcacgacat-ttagaaataaaagtcttatgtgaacatagaaaaaaatgtaaaagcat |
2326200 |
T |
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| Q |
200 |
catttatgaaggatacatgtttttctcctttgcatcattctttgaaggggaaatgac |
256 |
Q |
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| T |
2326199 |
catttacgaaggatacatgtatttctcctatgcatcattctttgaaagggaaatgac |
2326143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 2335862 - 2335724
Alignment:
| Q |
101 |
gtacgatttaatgattagactaattgatggtgctacacatgtgtcatgacatattagatataaaagtcttgtatgaacatggaaaatatttaatagcatc |
200 |
Q |
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| T |
2335862 |
gtacgatttaatgattagactcattgattgtgctacacatgtttgacg--aaattagatataaaagtctagtgtgaagatggaaaa-atttaatagcatt |
2335766 |
T |
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| Q |
201 |
atttatgaaggatacatgtttttctcctttgcatcattcttt |
242 |
Q |
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| T |
2335765 |
atttatgaaggatacatgtttttctcttttgcatcattcttt |
2335724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2319583 - 2319490
Alignment:
| Q |
1 |
ttttgagatctaatgaatcgcatacattgttctaagatacataaaaaacatttataatgttgtgtgactaacatgtttgt-ggcccctctcattct |
95 |
Q |
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| T |
2319583 |
tttttagatctaatgaattgcttacattattctatgatacctaaaaaa--tttataatgttgtgtgactagcatgttcgtcggccactctcattct |
2319490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2335947 - 2335889
Alignment:
| Q |
1 |
ttttgagatctaatgaatcgcatacattgttctaagatacataaaaaacatttataatg |
59 |
Q |
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| T |
2335947 |
ttttgagatctaatgaatttcatacattgttctaatatgtatatagaacatttataatg |
2335889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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