View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13931_high_5 (Length: 367)
Name: NF13931_high_5
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13931_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 3702199 - 3702530
Alignment:
| Q |
20 |
gaaaggcatgtcaagatttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctga |
119 |
Q |
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| T |
3702199 |
gaaaggcatgtcaagatttaggagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctga |
3702298 |
T |
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| Q |
120 |
acctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagcaaattgcaggaagagctggtagaagag |
219 |
Q |
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| T |
3702299 |
acctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtggcaaaattcttactgttccagcaaattgcaggaagagctggtagaagag |
3702398 |
T |
|
| Q |
220 |
gatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggtt |
319 |
Q |
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| T |
3702399 |
gatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacagccctttgaccatgttacgacggtt |
3702498 |
T |
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| Q |
320 |
gacatttttcctttttacgagcatgtagaatt |
351 |
Q |
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| T |
3702499 |
gacatttttcctttttacgagcatgtagaatt |
3702530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 3717062 - 3717240
Alignment:
| Q |
172 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccg-ctactaccttgcatttggatgatatgga |
270 |
Q |
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| T |
3717062 |
caaaattcttattgttccagcaaattgcaggaagagctggtag--gagtatgcctttatcctgatgaactggccactaccttgcagttggatgatatgga |
3717159 |
T |
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| Q |
271 |
ttatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
351 |
Q |
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| T |
3717160 |
ttatttgatcgagtgtttgaaacagccctttgaccacgttacgagggttggcattttccctttttacgagcaagtagaatt |
3717240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 3705689 - 3705854
Alignment:
| Q |
195 |
attgcaggaagagctggtagaagaggatgcctttatcccgatggacc-gctactaccttgcatttggat-------gatatggattatttgatcaagtgt |
286 |
Q |
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| T |
3705689 |
attgcaggaagatctgatagaagaggatgcctttatcctgatggacttgctactaccttgcatttggattttggatgatatggattatttgatcgtgtgt |
3705788 |
T |
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| Q |
287 |
ttgaaacaa-ccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
351 |
Q |
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| T |
3705789 |
ttggaacaagccctttgaccacgttacgagggttggcatttttcttttttacgagcaagtagaatt |
3705854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 3708327 - 3708561
Alignment:
| Q |
116 |
ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattct-----tactgtt----ccagcaaattgcaggaaga |
206 |
Q |
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| T |
3708327 |
ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaaga |
3708426 |
T |
|
| Q |
207 |
gctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgacc |
305 |
Q |
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|| ||| |||||||||||||||||| |||||||| | | || ||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||| | |
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| T |
3708427 |
gccggttgaagaggatgcctttatctcgatggactcaccacaaccttgcatttagatgatttgatttacttgatagagtgtttgaaacca-cctttgatc |
3708525 |
T |
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| Q |
306 |
atgttacgagggttgacatttttcctttttacgagca |
342 |
Q |
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| T |
3708526 |
atgctactaaggttggc-cttttcctttttatgagca |
3708561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 3713740 - 3713791
Alignment:
| Q |
172 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatg |
223 |
Q |
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| T |
3713740 |
caaaattcttactgttccagcaaattgcaggaagtgctggtggaagaggatg |
3713791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 351
Target Start/End: Complemental strand, 3520411 - 3520150
Alignment:
| Q |
105 |
tggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagc------------ |
192 |
Q |
| |
|
|||||| |||||| ||||| ||||||| |||||||||||| | || |||||| |||||||| ||| |||||||||| |||||||||| |
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| T |
3520411 |
tggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttcctgttccagcgtcacaggttaa |
3520312 |
T |
|
| Q |
193 |
--aaattgcaggaagagctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
289 |
Q |
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||||||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||||| |||||| |||||||| |
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| T |
3520311 |
gcaaattgccggaagagctggtcgaagaggatgtgtttatcccgatggactcgccactactttgcatttagaggatttggattacttgatcgagtgtttg |
3520212 |
T |
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| Q |
290 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
351 |
Q |
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|||||||||||||| ||||| || ||||| | ||||||||| ||| ||||| || ||||| |
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| T |
3520211 |
aaacaaccctttgatcatgtggagaaggttggcctttttccttattatgagcaggttgaatt |
3520150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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