View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13931_low_1 (Length: 480)

Name: NF13931_low_1
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13931_low_1
NF13931_low_1
[»] chr8 (1 HSPs)
chr8 (18-475)||(39168265-39168723)
[»] chr3 (1 HSPs)
chr3 (52-112)||(28229366-28229426)
[»] chr7 (1 HSPs)
chr7 (52-112)||(47271111-47271171)
[»] chr5 (3 HSPs)
chr5 (52-112)||(3440891-3440951)
chr5 (52-112)||(14733605-14733665)
chr5 (52-112)||(35650369-35650429)
[»] chr2 (2 HSPs)
chr2 (52-112)||(373128-373188)
chr2 (80-112)||(11864949-11864981)


Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 39168265 - 39168723
Alignment:
Q  18 agaactcacttaatggtaggatccattat-tacactttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatcattt 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  39168265 agaactcacttaatggtaggatccattatctacactttttgtgtcaatatatttccgaattgcagacttcatttattttgttaaatggagaggatcattt 39168364  T
Q  117 ctcaataaaaatgtgatatatcagttactaaaagcggaatggagcaaatgatttcttaatatgcttagaaatacccccaatctgttccaataaggatatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168365 ctcaataaaaatgtgatatatcagttactaaaagcggaatggagcaaatgatttcttaatatgcttagaaatacccccaatctgttccaataaggatatt 39168464  T
Q  217 tgatgaatccatttctgagttatgcggggaaacggggagaaagaaatgcttcggagggaggacgacagcaaggaaaatggaacgtgagtttcaaataaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168465 tgatgaatccatttctgagttatgcggggaaacggggagaaagaaatgcttcggagggaggacgacagcaaggaaaatggaacgtgagtttcaaataaaa 39168564  T
Q  317 aacctaggaaaatgtttgtctagatgttttgtgtccacatatacacgtggcgttactatagactttgactttttaggtcaaaatagactctaactcaatt 416  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168565 gacctaggaaaatgtttgtctagatgttttgtgtccacatatacacgtggcgttactatagactttgactttttaggtcaaaatagactctaactcaatt 39168664  T
Q  417 actcatacattggtccttcaagtttaaattaaactgggtcatccatcatgatgatgtcc 475  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39168665 actcatatattggtccttcaagtttaaattaaactgggtcatccatcatgatgaggtcc 39168723  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 28229426 - 28229366
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| |||| ||||| ||||||| ||| |||||||||| ||||||||||||||||    
T  28229426 tttttgtgtctatatctttcctaattgcacactccatttattttaataaatggagaggatc 28229366  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 47271171 - 47271111
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| || | | ||| ||||||||||| ||||||||||| |||||||||||||||    
T  47271171 tttttgtgtctatctctctccaaattgcaaactccatttattttgctaaatggagaggatc 47271111  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 3440891 - 3440951
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| || | ||||| ||||| || || |||||||||| ||||||||||||||||    
T  3440891 tttttgtgtctatctctttcctaattgtaatctccatttattttaataaatggagaggatc 3440951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 14733605 - 14733665
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| || | ||||| |||  ||| ||||||||||||| ||||||||||||||||    
T  14733605 tttttgtgtctatctctttcctaatgacaatcttcatttatttttataaatggagaggatc 14733665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 35650369 - 35650429
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| || | ||| | |||||||| || |||||||||| ||||||||||||||||    
T  35650369 tttttgtgtctatcttttttctaattgcaatctccatttattttaataaatggagaggatc 35650429  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 373188 - 373128
Alignment:
Q  52 tttttgtgtcaatatatttccgaattgcaaacttcatttattttgataaatggagaggatc 112  Q
    |||||||||| || | ||||  |||||||| || |||||||||| ||||||||||||||||    
T  373188 tttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatc 373128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 11864949 - 11864981
Alignment:
Q  80 aaacttcatttattttgataaatggagaggatc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  11864949 aaactccatttattttgataaatggagaggatc 11864981  T

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