View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13931_low_11 (Length: 243)
Name: NF13931_low_11
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13931_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 39227421 - 39227637
Alignment:
| Q |
11 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
110 |
Q |
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| T |
39227421 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcaccatagagtttgttgatgaacaag |
39227520 |
T |
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| Q |
111 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227521 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
39227620 |
T |
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| Q |
211 |
ctaattgaggtggaatt |
227 |
Q |
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||||||||||||||||| |
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| T |
39227621 |
ctaattgaggtggaatt |
39227637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 25546622 - 25546836
Alignment:
| Q |
11 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
110 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
25546622 |
agaacctgtgaagttgttatgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcacca--gagtttgttgatgaacaag |
25546719 |
T |
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| Q |
111 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546720 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
25546819 |
T |
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| Q |
211 |
ctaattgaggtggaatt |
227 |
Q |
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||||||||||||||||| |
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| T |
25546820 |
ctaattgaggtggaatt |
25546836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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