View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13931_low_2 (Length: 472)
Name: NF13931_low_2
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13931_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 28595693 - 28596147
Alignment:
| Q |
1 |
ccacatgagtaatactcgagtcggtgagacctccgctaaaacccatgatccaagagccattttgattatataagacaccgttgaatctagctttactaga |
100 |
Q |
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| T |
28595693 |
ccacatgagtaatattcgagtcggtgagaccgccgctaaaacctatgatccaagagccattttgattatataagacaccgttgaatctagctttactaga |
28595792 |
T |
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| Q |
101 |
atataatagaaagctcccgtcatcattaagcaaaacacaattcaaggaggacggatgccgcattacctattgcacaacacaattctcagcaataccaacc |
200 |
Q |
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| T |
28595793 |
atacaatagaaagctcccgtcatcattaagcaaaacacaattcaaggaggacggataccacattacctgttgcacaacacaattctcagcaataccaact |
28595892 |
T |
|
| Q |
201 |
gggaagcaagtcgccaaaaggtttgcgagatttctaaacttcgcgatcacaatagaaaattgcaaagtctcttttccaagacaccaaaaatttcgagctt |
300 |
Q |
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| T |
28595893 |
gggaagcaagtcaccaaaaggtttgcgagatttctaaacttcacgatcacaatagaaaattgcaaagtctcttttccaagacaccaaaaatttcgagctt |
28595992 |
T |
|
| Q |
301 |
tccaattccacacaaaccagctnnnnnnnggatagaatttatacccttgctaaacattttgatccccaattaagcctcctgttggaaataaaaattaaca |
400 |
Q |
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| T |
28595993 |
tccaattccacacaaaccagctaaaaaaaggatagaatttatacccttgctaaacattttgatccacaattaagcctcctgttggaaataaaaattaaca |
28596092 |
T |
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| Q |
401 |
tatgtcaaaccaatcgcttgtcaaattcgaaaagagtgcacacaatcccttaaac |
455 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28596093 |
tatgacaaaccaatcacttgtcaaattcgaaaagagtgcacacaatcccttaaac |
28596147 |
T |
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