View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13931_low_4 (Length: 385)
Name: NF13931_low_4
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13931_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 219662 - 219307
Alignment:
| Q |
19 |
taatctcgatccaatgactgcctgcctacatactgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatag |
118 |
Q |
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| T |
219662 |
taatctcgatccaatgactgcctgcctacataccgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatag |
219563 |
T |
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| Q |
119 |
ctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattagg |
218 |
Q |
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| T |
219562 |
ctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattagg |
219463 |
T |
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| Q |
219 |
ttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219462 |
ttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatca |
219363 |
T |
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| Q |
319 |
ttagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
374 |
Q |
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| T |
219362 |
ttagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
219307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 184 - 374
Target Start/End: Original strand, 31651709 - 31651899
Alignment:
| Q |
184 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
283 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
284 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
374 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| ||||||||||| |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatg |
31651899 |
T |
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