View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13931_low_9 (Length: 248)

Name: NF13931_low_9
Description: NF13931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13931_low_9
NF13931_low_9
[»] chr4 (2 HSPs)
chr4 (53-223)||(52693705-52693878)
chr4 (71-103)||(3437416-3437448)
[»] chr8 (1 HSPs)
chr8 (70-123)||(3456823-3456876)
[»] chr5 (2 HSPs)
chr5 (67-134)||(20125022-20125088)
chr5 (54-119)||(6017371-6017437)
[»] chr3 (1 HSPs)
chr3 (71-103)||(48531304-48531336)
[»] chr1 (1 HSPs)
chr1 (67-134)||(51046137-51046205)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 223
Target Start/End: Complemental strand, 52693878 - 52693705
Alignment:
Q  53 cttttttgtggcgac-ggagtttgaacccgaaccttacatattttatgtattcttcctattaattgagttaaatttacgaggaaaacaaatcacaatctc 151  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52693878 cttttttgtggtgaccggagtttgaacccgaaccttacatatattatgtattcttcctattaactgagttaaatttacgaggaaaacaaatcacaatctc 52693779  T
Q  152 atgcataatattaagagcaagcagtgctagaaaat--ctctagtcatttcttctgaccattagaataatctacc 223  Q
    |||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  52693778 atgcataatattaagagcaaacagtgctagaaaatctctctagtaatttcttctgaccattagaataatctacc 52693705  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 3437448 - 3437416
Alignment:
Q  71 gtttgaacccgaaccttacatattttatgtatt 103  Q
    |||||||| ||||||||||||||||||||||||    
T  3437448 gtttgaactcgaaccttacatattttatgtatt 3437416  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 3456823 - 3456876
Alignment:
Q  70 agtttgaacccgaaccttacatattttatgtattcttcctattaattgagttaa 123  Q
    |||||||||||||||||||||||| ||||| ||| ||| ||| |||||||||||    
T  3456823 agtttgaacccgaaccttacatatattatgcattgttcatatcaattgagttaa 3456876  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 20125088 - 20125022
Alignment:
Q  67 cggagtttgaacccgaaccttacatattttatgtattcttcctattaattgagttaaatttacgagga 134  Q
    ||||||||||||||||||||| ||||| ||||| |||  |||||| |||||||||||  |||||||||    
T  20125088 cggagtttgaacccgaaccttgcatatattatgcatt-gtcctatcaattgagttaagcttacgagga 20125022  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 6017371 - 6017437
Alignment:
Q  54 ttttttgtggcgacggagtttgaa-cccgaaccttacatattttatgtattcttcctattaattgag 119  Q
    |||||||||| | ||||||||||| |||||||||| ||||| |||| |||| |||||||||| ||||    
T  6017371 ttttttgtggtggcggagtttgaaccccgaacctttcatatattatatattgttcctattaactgag 6017437  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 48531336 - 48531304
Alignment:
Q  71 gtttgaacccgaaccttacatattttatgtatt 103  Q
    ||||||||||||||||| |||||||||||||||    
T  48531336 gtttgaacccgaaccttgcatattttatgtatt 48531304  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 51046205 - 51046137
Alignment:
Q  67 cggagtttgaac-ccgaaccttacatattttatgtattcttcctattaattgagttaaatttacgagga 134  Q
    ||||||| |||| ||||||||||||||||||||||||| ||| ||  || ||||||||| | |||||||    
T  51046205 cggagttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacgagga 51046137  T

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