View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13932_high_4 (Length: 353)
Name: NF13932_high_4
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 44573931 - 44574254
Alignment:
| Q |
17 |
caccaatgtacattctcaacaaatgttctacacagagattataggagtggttccgaaagagacctgatctgggagaaagctatcaatgaatcatttgaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44573931 |
caccaatgtacattctcaacaaatgttctacacagagattataggagtggttccgaaagagacatgatctgggagaaagctatcaatgaatcatttgaat |
44574030 |
T |
|
| Q |
117 |
acttttggtgcactttgttacaatcatgtgccttttcagnnnnnnncaaagttgtaggatatattcctttctaatgctctttatgggcttggaacactta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
44574031 |
acttttggtgcactttgttacaatcatgtgccttttcagagaaaaacaaagttgtaggatatattcctttctaatgctctttat-ggcctggtgcactta |
44574129 |
T |
|
| Q |
217 |
agtttaacgtacgtggaatttaaagaaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatg |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44574130 |
agtttaatgtacgtggaatttaaagaaatcataaacatccttaattatagtgtgc--atatgtatggatgacttaataataactggcagcgtaaaaaatg |
44574227 |
T |
|
| Q |
317 |
agattgaatattttaagagattgatga |
343 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44574228 |
agattgaatattttaagagattgatga |
44574254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 343
Target Start/End: Original strand, 22489974 - 22490073
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgat |
341 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22489974 |
aaatcataaacatcctcaattatagtgtgcatat--atatggatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgat |
22490071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 25383431 - 25383332
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgat |
341 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25383431 |
aaatcataaacatcctcaattatagtgtgcatatatat--ggatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgat |
25383334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 10123149 - 10123186
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatatatat |
279 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10123149 |
aaatcataaacatcctcaattatagtgtgcatatatat |
10123186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 10123024 - 10123057
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatat |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
10123024 |
aaatcataaacatcctcaattatagtgtgcatat |
10123057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 19306583 - 19306620
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatatatat |
279 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
19306583 |
aaatcataaacatccttaattatagtgtgcatatatat |
19306620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 28244905 - 28244942
Alignment:
| Q |
242 |
aaatcataaacatcctcaattacagtgtgcatatatat |
279 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
28244905 |
aaatgataaacatcctcaattatagtgtgcatatatat |
28244942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University