View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_high_7 (Length: 228)
Name: NF13932_high_7
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 11803858 - 11803665
Alignment:
| Q |
12 |
gaagaatatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaacgttcatggatttccagctggtagttgtc |
111 |
Q |
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| T |
11803858 |
gaagaaaatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaacgttcatggatttccagctggtagttgtc |
11803759 |
T |
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| Q |
112 |
ctactgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtcttgcagctgataatgtaattgatgctca |
205 |
Q |
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| T |
11803758 |
ctactgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtcttgcagctgataatgtaattgatgctca |
11803665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 11811602 - 11811409
Alignment:
| Q |
12 |
gaagaatatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaacgttcatggatttccagctggtagttgtc |
111 |
Q |
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| T |
11811602 |
gaagaaaatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaatcttcatggttttccagcaggtagttgtc |
11811503 |
T |
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| Q |
112 |
ctactgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtcttgcagctgataatgtaattgatgctca |
205 |
Q |
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| T |
11811502 |
ctactgtcggtgtcggaggtcacttcagcggaggtggatttggtaccatatttagaaaatatggtcttgcaactgataatataattgatgctca |
11811409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 11933665 - 11933781
Alignment:
| Q |
75 |
aaaagtaacgttcatggatttccagctggtagttgtcctactgttggtgtaggaggtcacttcagtggaggtggatttggta-cattatttagaaaatat |
173 |
Q |
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| T |
11933665 |
aaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatg-agaaaatat |
11933763 |
T |
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| Q |
174 |
ggtcttgcagctgataat |
191 |
Q |
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| T |
11933764 |
ggtctttcagttgataat |
11933781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 11946886 - 11947002
Alignment:
| Q |
75 |
aaaagtaacgttcatggatttccagctggtagttgtcctactgttggtgtaggaggtcacttcagtggaggtggatttggta-cattatttagaaaatat |
173 |
Q |
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| T |
11946886 |
aaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatg-agaaaatat |
11946984 |
T |
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| Q |
174 |
ggtcttgcagctgataat |
191 |
Q |
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| T |
11946985 |
ggtctttcagttgataat |
11947002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 2176039 - 2176128
Alignment:
| Q |
116 |
tgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtcttgcagctgataatgtaattgatgctca |
205 |
Q |
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| T |
2176039 |
tgttggagtaggtggtcacatcagtggaggtggatttggcaccttggtaaggaaacatggtctagcagcagatcatgttgttgatgctca |
2176128 |
T |
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