View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_1 (Length: 950)
Name: NF13932_low_1
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 720; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 130 - 950
Target Start/End: Complemental strand, 32269326 - 32268509
Alignment:
| Q |
130 |
attttttaaattgataaaccacaatcgcatcaacaatacgaaaggatacatcaaacaaaatacaagaggcaccataaatatgcggccacctcccaaaagg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32269326 |
attttttaaattgataaaccacaatcgcatcaacaatacgaaaggatacatcaaacaaaatacaagaggcaccataaatatgcggccaccccccaaaagg |
32269227 |
T |
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| Q |
230 |
ctaaaccacctaagataaactccaaaggaataaaatagcaccatggaggaaaaaacttaaaaacacccataaccaagaaactgtctcaataagcactttg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269226 |
ctaaaccacctaagataaactccaaaggaataaaatagcac----gaggaaaaaacttaaaaacacccataaccaagaaactgtctcaataagcactttg |
32269131 |
T |
|
| Q |
330 |
agttccaacaccattcatggaataaacaagatgatatcttaatttattcaaacttcaatcccaaaacaccaccataatttcctttacaatttcatcaatc |
429 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32269130 |
agttccaacaccattcatagaataaacaagatgatatcttaatttattcaaacttcaatcccaaaacaccaccataatttcctctacaatttcatcaatc |
32269031 |
T |
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| Q |
430 |
tccttaataattatattgacaattatgtcatttctacattttt-aaatcatccaaagagtagcatgccaaattatcaaccatccctttccgagcttctta |
528 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32269030 |
tccttaatacaaatattgaaaattatgtcatttctacattttttaaatcatccaaagagtagcatgccaaattatcaaccatcccttttagagcttctta |
32268931 |
T |
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| Q |
529 |
tccctcacctccctcctcaaaaattcaaaatggacaaacaaagtttgccgagttatgatattgatttcaagccaacacaacaccttttaatttggaccac |
628 |
Q |
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| T |
32268930 |
tccctcacctccctcctcaaaaattcaaaatggacaaacaaattttgccgagttatgatattgatttcaagccaacacaacaccttttaatttggaccac |
32268831 |
T |
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| Q |
629 |
aactaaaataatgcattaagtgagagnnnnnnnctatgtgacccatcattaacgagagaggataacttcccaaaatggtttacctttttctcaccacatt |
728 |
Q |
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| T |
32268830 |
aactaaaataatgcattaagtgagagtttttttctatgtgacccatcattaacgagagaggataacttcccaaaatggtttacctttttctcaccacatt |
32268731 |
T |
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| Q |
729 |
gtaacaccaatataggaactttcccattacaaaattcagtagatgacaacatttctccaaaaacacctaacaaatttgcattttccataaaatttgtcat |
828 |
Q |
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| T |
32268730 |
gtaacaccaatataggaactttcccattacaaaattcagtagatgacaacatttctccaaaaacacccaacaaatttgcattttccataaaatttgtcat |
32268631 |
T |
|
| Q |
829 |
ttcttcatcagtcaaatctccaatattatgcctcttacccaccaacacaagatcgtagttttcattacctaaacctcgaagtgcttctaacaactgtgaa |
928 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32268630 |
ttcttcatcagtcaaatctccaatattatgcctcttacccaccatcacaagatcatagttttcattacctaaacctcgaagtgcttctaacaactgtgta |
32268531 |
T |
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| Q |
929 |
tagccctccaccacaatttcat |
950 |
Q |
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|||||||||||||||||||||| |
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| T |
32268530 |
tagccctccaccacaatttcat |
32268509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 32269436 - 32269402
Alignment:
| Q |
17 |
acttttttctatcttaacaaagtaatgaatagaaa |
51 |
Q |
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| T |
32269436 |
acttttttctatcttaacaaagtaatgaatagaaa |
32269402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 7701659 - 7701743
Alignment:
| Q |
454 |
atgtcatttctacatttttaaatcatccaaagagtagcatgccaaattatcaaccatccctttccgagcttcttatccctcacct |
538 |
Q |
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||||||||||| |||| |||| | |||||| |||||||||||||| ||| |||| ||||||| |||||||||| |||||||| |
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| T |
7701659 |
atgtcatttcttgatttccaaatgacccaaagtgtagcatgccaaatcatccaccacccctttcttagcttcttattcctcacct |
7701743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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