View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_2 (Length: 499)
Name: NF13932_low_2
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 8465503 - 8465198
Alignment:
| Q |
15 |
aatgttgacgtccaaaagcactgcatgaagca-taaaaagttcctccttttttccggtcgaaagatagttctcctacatggtaacattgtcgaccaacgt |
113 |
Q |
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| T |
8465503 |
aatgttgacgtccaaaagcactgcatgaagcaataaaaagttcctccttttttccggtcgaaagatagttct---acatggtaacattgtcgaccaacgt |
8465407 |
T |
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| Q |
114 |
gccattttttataaaccaaaatcaggatgcaacactagatcaaatggttaagaaattcaagtctctaccacgtctatcacactatattgattaacgtggg |
213 |
Q |
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| T |
8465406 |
gccattttttataaaccaaaatcaggatgcaacactagatcaaatggttaagaaattcaagtctctaccacgtctatcacactatattgattaacgtggg |
8465307 |
T |
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| Q |
214 |
ccagtttaaataaccttgttcgacaacaagttcac-aagaaatcaaagtcgatgaattttaaccttctcactctccctatttttcctatatatttttata |
312 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
8465306 |
ccagtttaaataaccttgttcgacaacaagttcacaaaaaaatcaaaatcgatgaattttaaccttctcact-ttccta-ttttcctatatatttttata |
8465209 |
T |
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| Q |
313 |
aaagattaaga |
323 |
Q |
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| T |
8465208 |
aaagattaaga |
8465198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 323 - 481
Target Start/End: Complemental strand, 8465108 - 8464951
Alignment:
| Q |
323 |
atttgttaatctcgtacaacgtgataaattaaagtttgaatgtcaactaaaaaatgtgttcatatttaatatttgtcggtgtctcgaacaaaaccccatc |
422 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
8465108 |
atttattaatctcgtacaacgtgataaattaaagtttgaatatcaactaaaaaatgtgttcgtatttaatatttgtcggtgtctcgaacaaaa-cccatc |
8465010 |
T |
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| Q |
423 |
taaatatttaaacctagtgaactattcaaaatctctctccctctacttcactcctgtct |
481 |
Q |
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| T |
8465009 |
taaatatttaaacctagtgaactattcagaatctctctccctctacttcactcctgtct |
8464951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 23605542 - 23605506
Alignment:
| Q |
338 |
acaacgtgataaattaaagtttgaatgtcaactaaaa |
374 |
Q |
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| T |
23605542 |
acaacgtgataaattaaagtttgaatttcaactaaaa |
23605506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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