View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_3 (Length: 398)
Name: NF13932_low_3
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 215 - 381
Target Start/End: Original strand, 21557991 - 21558153
Alignment:
| Q |
215 |
tggtgatatattaacaagaattgatagatatatatattacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaa |
314 |
Q |
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| T |
21557991 |
tggtgatatattaacaagaattgatagatat----attacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaacagacctcgccggaaa |
21558086 |
T |
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| Q |
315 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaagagcgggtgttattagcagcaaga |
381 |
Q |
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| T |
21558087 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaggagcgagtattattagcagcaaga |
21558153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21557777 - 21557917
Alignment:
| Q |
1 |
taaaaatagggtaagttttatggtttagggtttcatacaatacatcaaaatagtgaaactccttttaggaccctactaattgttggtttcgctatgtgac |
100 |
Q |
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| T |
21557777 |
taaaaatagggtaagttttagggtttatggtttcgtacaatacaccaaaatggtgaaactccttttaggaccctattaattgttggtttcgctatgtgac |
21557876 |
T |
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| Q |
101 |
gctatcatttatgataagttgtgtgctaatatacttttcct |
141 |
Q |
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| T |
21557877 |
gctatcatttatgataagttgtgtgctaatatacttttcct |
21557917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 20855189 - 20855264
Alignment:
| Q |
251 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccggta |
326 |
Q |
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| T |
20855189 |
ttaccttagataaccaatgcaaacaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccggta |
20855264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 41002849 - 41002921
Alignment:
| Q |
251 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccg |
323 |
Q |
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| T |
41002849 |
ttaccttagataaccaatgcaaagaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccg |
41002921 |
T |
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