View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_4 (Length: 379)
Name: NF13932_low_4
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 24722383 - 24722762
Alignment:
| Q |
1 |
gtttctcttcctttccctttgtttatttcgatttcatttattaattaattcatgtgtctgccctgcaggaggttagcctcccgccaccctcgcaaatggc |
100 |
Q |
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| T |
24722383 |
gtttctcttcctttccctttgtttatttcgatttcatttattaattcattcatgtgtctgcccagcaggaggttagcctgccgccacgctcgcaaatggc |
24722482 |
T |
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| Q |
101 |
accgagaacaactgccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgttagaaattctc |
200 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24722483 |
accgggaacaacagccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgttagaaattctc |
24722582 |
T |
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| Q |
201 |
tataggctt-aagtcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatcattcatttcccatcctaaattcgccaaaaagcacttttgtg |
299 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24722583 |
tataggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattcatctcccatcctaaattcgccaaaaagcacttttgtg |
24722682 |
T |
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| Q |
300 |
tttcagccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaagacttgccctctc |
379 |
Q |
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| T |
24722683 |
tttcaaccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaaggctttccctctc |
24722762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 7175202 - 7175107
Alignment:
| Q |
164 |
tcccactcttccattcgatcttgtgttagaaattctctataggctt-aagtcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatc |
258 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||| | || || |||| ||||| ||| ||||||||||| |
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| T |
7175202 |
tcccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatc |
7175107 |
T |
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