View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13932_low_6 (Length: 308)

Name: NF13932_low_6
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13932_low_6
NF13932_low_6
[»] scaffold0483 (1 HSPs)
scaffold0483 (203-244)||(3640-3681)
[»] scaffold0109 (1 HSPs)
scaffold0109 (203-244)||(48480-48521)
[»] chr8 (2 HSPs)
chr8 (203-244)||(6787810-6787851)
chr8 (203-244)||(6765380-6765421)
[»] chr2 (1 HSPs)
chr2 (203-244)||(28620431-28620472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (203-244)||(125988-126029)
[»] chr7 (2 HSPs)
chr7 (207-244)||(20027779-20027816)
chr7 (139-175)||(20027893-20027929)
[»] chr4 (1 HSPs)
chr4 (203-244)||(14694239-14694280)
[»] chr6 (1 HSPs)
chr6 (203-244)||(14647765-14647806)


Alignment Details
Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 3640 - 3681
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  3640 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 3681  T

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Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 48480 - 48521
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48480 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 48521  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6787851 - 6787810
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  6787851 tagttaatgattaataaatgattgaatagtaaaatgaacatt 6787810  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6765421 - 6765380
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  6765421 tagttaatgattaataaatgattgaataataaaatgaacatt 6765380  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 28620472 - 28620431
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28620472 tagttaatgattaacaaataattgaatagtaaaatgaacatt 28620431  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 125988 - 126029
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  125988 tagttaattattaacaaatgattgaatagcaaaatgaacatt 126029  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 20027816 - 20027779
Alignment:
Q  207 taatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20027816 taatgattaataaatgattgaatagtaaaatgaacatt 20027779  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 20027929 - 20027893
Alignment:
Q  139 ttctttcaatttttgtgtttgaactgacatatttctt 175  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  20027929 ttctttcaatttttgtgtttgagctgccatatttctt 20027893  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 14694239 - 14694280
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  14694239 tagttaatgattaacaaatgattgaataacaaaatgaacatt 14694280  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 14647765 - 14647806
Alignment:
Q  203 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 244  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  14647765 tagttaatgattaacaaatgattgaaaaacaaaatgaacatt 14647806  T

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