View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_7 (Length: 250)
Name: NF13932_low_7
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_7 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 4562 - 4791
Alignment:
| Q |
19 |
aatcactaatccaaaatctctcaaaagcaatcctacacactcaaggcctaaaaaa-ccttcactaaattttaaaa-atttcggaggtgttacatacatca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4562 |
aatcactaatccaaaatctctcaaaagcaatcctacacactcaaggcctaaaaaaaccttcactaaattttaaaaaatttcggaggtgttacatacatca |
4661 |
T |
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| Q |
117 |
ttgtcaatcatgatcttttcatgctctatagatgaattattaatgagttttaaatataatatatagaatagcttcagctctgctatagcctaaggttcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4662 |
ttgtcaatcatgatcttttcatgctctatagatgaattattaatgagttttaaatataatatatagaatagcttcagctctgctatagcctaaggttcac |
4761 |
T |
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| Q |
217 |
atgaaatcccaaatattattcttctctctc |
246 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
4762 |
atgaaatcccaaatattattcttttctctc |
4791 |
T |
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