View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13932_low_9 (Length: 212)
Name: NF13932_low_9
Description: NF13932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13932_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33847453 - 33847636
Alignment:
| Q |
1 |
aaacgatattcatctaactaaacgaatattccatctaattcagataacaaaattcattaagataacttccagataaatatcatatggtttaaaatcttca |
100 |
Q |
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| T |
33847453 |
aaacgatattcatctaactaaacgaatattc----------agataacaaaattcattaagataacttccagataaatatcatatggtttaaaatcttca |
33847542 |
T |
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| Q |
101 |
aaattaacactaaacaaaatagtgttacnnnnnnntgttgtgaatagttgtgttgcaaaataatgatgctcacattcactcaaatctctctatt |
194 |
Q |
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| T |
33847543 |
aagttaacactaaacaaaatagtgttacaaaaaaatgttgtgaatagttgtgttgcaaaataatgatgctcacattcactcaaatcactctatt |
33847636 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 28216658 - 28216578
Alignment:
| Q |
53 |
ttcattaagataacttccagataaatatcatat-----ggtttaaaatcttcaaaattaacactaaacaaaatagtgttac |
128 |
Q |
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| T |
28216658 |
ttcattaagataacttcaagataaatatcatatcatatggtttaaagtcttcatagttgacactaaacaaaatagtgttac |
28216578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 28227507 - 28227430
Alignment:
| Q |
56 |
attaagataacttccagataaatatcatat-----ggtttaaaatcttcaaaattaacactaaacaaaatagtgttac |
128 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||| |
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| T |
28227507 |
attaagataacttcaagataaatatcatatcatatggtttaaagtcttcatagttgacactaaacaaaatagtgttac |
28227430 |
T |
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