View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13933_low_1 (Length: 496)
Name: NF13933_low_1
Description: NF13933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13933_low_1 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 1418123 - 1418346
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
1418123 |
atgaataaggagtggcaggatttgagataattgataagaaaaagaagctttcattgttgttctttcaagatttggtggttagcgcaaaggagaaggtgtg |
1418222 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
1418223 |
agtgtgcagattaggggggatcaagtggagaacggttca-cgtgagttaatttcacaataattaggacgcttggattaaacataataaatggctacgatt |
1418321 |
T |
|
| Q |
212 |
tggtgttaacggatttgttgacacc |
236 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
1418322 |
tggtgttaacggattcgttgacacc |
1418346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 38225525 - 38225313
Alignment:
| Q |
30 |
gatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38225525 |
gatttgtgataattgataagaaaaagaagctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggg |
38225426 |
T |
|
| Q |
130 |
gatcaagtggagaacggttcaccgtgag-ttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttg |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
38225425 |
gatcaagtggagaacggttca-cgtgagtttaatttcacagtaattagaacccttggattaaacataataaatggctatgatttggtgttaacggattcg |
38225327 |
T |
|
| Q |
229 |
ttgacacctggtgt |
242 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38225326 |
ttgacacctggtgt |
38225313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 8376230 - 8376002
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| | | | |
|
|
| T |
8376230 |
atgaataaggagtggtaggatttgagatcattgataagaaaaagacacttttattgttgttctttcaagctttgctggttagcgcttaggagaaagag-g |
8376132 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatt |
211 |
Q |
| |
|
||||||||||||| |||||||| | ||||| |||||| |||||||||||| ||||||||||| | |||||||||||| || |||||||||| |||| |
|
|
| T |
8376131 |
agtgtgcagatta--ggggatcagatcgagaaaggttca-tgtgagttaattttacaataattaggacccttggattaaatgtattaaatggctaagatt |
8376035 |
T |
|
| Q |
212 |
tggtgt---taacggatttgttgacacctggtg |
241 |
Q |
| |
|
| |||| ||| ||||| |||||||||||||| |
|
|
| T |
8376034 |
tagtgtcaataatggattcgttgacacctggtg |
8376002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 24453585 - 24453765
Alignment:
| Q |
59 |
cttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggggatcaagtggagaacggttcaccgtgagt |
158 |
Q |
| |
|
|||| |||||||||| ||||| ||||| |||||| |||||| |||| | | |||||||||||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
24453585 |
ctttcattgttgttcattcaagctttgttggttagagcaaagaagaatgag-gagtgtgcagattaggagggatcaaatggagaaaagttca-cgtgagt |
24453682 |
T |
|
| Q |
159 |
taatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| || ||||| ||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
24453683 |
taatttca-aataattatgacccttggattaaatgtattaaataactaagatttggtgtcaacaaatccgttgacacctggtgt |
24453765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 1417711 - 1417621
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| ||| |||| || | |||||||||||| || ||||||| || |||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
1417711 |
cgtgagttaattttacattaatcaggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt |
1417621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 38225924 - 38226014
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |||||||| | | |||||||||||| || ||||||| || |||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
38225924 |
cgtgagttaattttacaataatctggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt |
38226014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 1553632 - 1553421
Alignment:
| Q |
30 |
gatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1553632 |
gatttgtgataattgataagaaaaagaagctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggg |
1553533 |
T |
|
| Q |
130 |
gatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgt |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
1553532 |
gatcaagtggagaacggttca-cgtgagttaatttcacagtaattagaacccttggattaaacataataaatggctatgatttggtgttaacggattcgt |
1553434 |
T |
|
| Q |
230 |
tgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1553433 |
tgacacctggtgt |
1553421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 1554031 - 1554121
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |||||||| | | |||||||||||| || ||||||| || |||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
1554031 |
cgtgagttaattttacaataatcgggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt |
1554121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 22301419 - 22301208
Alignment:
| Q |
30 |
gatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22301419 |
gatttgtgataattgataagaaaaagaagctttcattgttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtgcagattaggggg |
22301320 |
T |
|
| Q |
130 |
gatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgt |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
22301319 |
gatcaagtggagaacggttca-cgtgagttaatttcacagtaattagaacccttggattaaacataataaatggctatgatttggtgttaacggattcgt |
22301221 |
T |
|
| Q |
230 |
tgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22301220 |
tgacacctggtgt |
22301208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 287 - 482
Target Start/End: Original strand, 15536569 - 15536765
Alignment:
| Q |
287 |
atatatattacaatatttaatctgagaaaatatagttataa-atttaattaacgttaatatatgattccctcnnnnnnntcattaatatatgctatccac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15536569 |
atatatattacaatatttaatctgagaaaatatagttataacatttaattaacgttaatatatgattccctcaaaaaaatcattaatatatgctatccac |
15536668 |
T |
|
| Q |
386 |
tttggataaatcaatgcacaaactaagcaaacactagatcgatgcagtgaaacttttttcttttgagaatagttcttag-ttttcctgttttcatttt |
482 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15536669 |
tttggataaatcaatgcacaa-ctaagcaaacacaagatcgatgcagtgaaacttttttcttttgagaatagttcttagtttttcctgttttcatttt |
15536765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 26752256 - 26752041
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
26752256 |
atgaataaggagtggcaggatttgagataattgataagaaaaagaagctttcattgttattctttc-------ggtggttagcgcaaaggagaaggtgtg |
26752164 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatt |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
26752163 |
ag-------attaggggggatcaagtggagaacggttcac-gtgagttaatttcacaataattaggacccttggattaaacataataaatggctacgatt |
26752072 |
T |
|
| Q |
212 |
tggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |
|
|
| T |
26752071 |
tagtgttaacggattcgttgacacctggtgt |
26752041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 24120739 - 24120513
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||| |||| |||||||| |||| || | | | |
|
|
| T |
24120739 |
atgaataaggagtggtaggatttgagatcattgataagaaaaagacactttcattgttgttctttcaagctttattggttagcgttgaggaaaaagag-g |
24120641 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatt |
211 |
Q |
| |
|
|||||||| |||| |||||||| ||||||| |||||| |||||||||||| |||||| |||| | | ||| |||||| || |||||||||| |||| |
|
|
| T |
24120640 |
agtgtgcaaatta--ggggatcagatggagaaaggttca-tgtgagttaattttacaatagttaggaccattgaattaaatgtattaaatggctaagatt |
24120544 |
T |
|
| Q |
212 |
tggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
| |||| || ||||| |||||||||| |||| |
|
|
| T |
24120543 |
tagtgtcaatggattggttgacacctagtgt |
24120513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 22301818 - 22301908
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |||||||| | | |||||||||||| || ||||||| || |||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
22301818 |
cgtgagttaattttacaataatcgggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt |
22301908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 26752671 - 26752761
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| ||| |||| || | |||||||||||| || ||||||| || |||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
26752671 |
cgtgagttaattttacagtaatcaggacccttggattaaatgtattaaatggttaagatttgatgtcaacgaattcgttgacacctggtgt |
26752761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 27441969 - 27442179
Alignment:
| Q |
30 |
gatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| |||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
27441969 |
gatttgtgataattgataagaaaaagaagttttcattcttgttctttcaagctttggtggttagcgcaaaggagaaggtgtgagagtg-agattaggggg |
27442067 |
T |
|
| Q |
130 |
gatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgt |
229 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
27442068 |
gatcaagtggagaatggttcac-gtgagttaatttcacagtaattagaacccttggattaaacataataaatggctatgatttggtgttaacggattcgt |
27442166 |
T |
|
| Q |
230 |
tgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27442167 |
tgacacctggtgt |
27442179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 183482 - 183319
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| || |||||| ||| |||||||||||||||| || |
|
|
| T |
183482 |
atgaataaggagtggcaggatttgagataattgataagaaaaataagctttcattgttgttcttttaagctttggtagttggcgcaaaggagaaggtttg |
183383 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattag |
176 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
183382 |
agtgtgcagattagcggggatcaagtggagaacggttca-tgtgagttaatttcacaataattag |
183319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 27441570 - 27441480
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggtgt |
242 |
Q |
| |
|
||||||||||||| |||||||| | | |||||||||||| || ||||||| || |||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
27441570 |
cgtgagttaattttacaataatcggaacccttggattaaatgtattaaatggttaagatttgatgtcaacgaattcgttgacacctggtgt |
27441480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 183894 - 183982
Alignment:
| Q |
152 |
cgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacggatttgttgacacctggt |
240 |
Q |
| |
|
||||||||||||| |||||||| || | ||||||||||| || ||||| | || ||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
183894 |
cgtgagttaattttacaataatcaggacacttggattaaatgtattaaatagttaagatttggtgttaacgaattcgttgacatctggt |
183982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 35719020 - 35719228
Alignment:
| Q |
12 |
atgaataaggagtggccggatttgagataattgataagaaaaagaagcttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtg |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| | || |||| | | | |
|
|
| T |
35719020 |
atgaataaggagtggcgggatttgagatcattgataagaaaaagacgcttttattgttgttctttcaagctttgttggtaagcgtagagaagaaagagcg |
35719119 |
T |
|
| Q |
112 |
agtgtgcagattaggggggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatt |
211 |
Q |
| |
|
||||| || |||| |||||||| || |||| |||||| ||||||||||||||||||||||| | |||| | |||||||| || |||||||| |||| |
|
|
| T |
35719120 |
agtgtccatatta--ggggatcagatgaagaaaggttca--ttgagttaatttcacaataattaggaccctttgtttaaacat-attaatggctaagatt |
35719214 |
T |
|
| Q |
212 |
tggtgttaacggat |
225 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
35719215 |
tgatgtcaacggat |
35719228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 982301 - 982457
Alignment:
| Q |
59 |
cttttattgttgttctttcaacctttggcggttagcgcaaaggagaaggtgtgagtgtgcagattaggggggatcaagtggagaacggttcaccgtgagt |
158 |
Q |
| |
|
|||| |||||||||| ||||| ||||| |||||| | ||||||||| | | |||||||||||||||| |||||||| ||||||| |||||| |||||| |
|
|
| T |
982301 |
ctttcattgttgttcattcaagctttgttggttagaggaaaggagaacgag-gagtgtgcagattaggagggatcaaatggagaaaagttcac-gtgagt |
982398 |
T |
|
| Q |
159 |
taatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgt |
217 |
Q |
| |
|
||||||||||||||||| | |||||||||||| || |||||||||| |||||||||| |
|
|
| T |
982399 |
taatttcacaataattatgacccttggattaaatgtattaaatggctaagatttggtgt |
982457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 35718479 - 35718410
Alignment:
| Q |
153 |
gtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaacg |
222 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
35718479 |
gtgagttaatttcacaataattaggacatttggattaaacatattaaatggctaagatttggtgtcaacg |
35718410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 16572 - 16664
Alignment:
| Q |
128 |
gggatcaagtggagaacggttcaccgtgagttaatttcacaataattagtatccttggattaaacataataaatggctacgatttggtgttaac |
221 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
16572 |
gggatcagatggagaaaggttcac-gtgagttaatttcacaataattatgacccttggattaaatgtattaaatggctaagatttggtgttaac |
16664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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