View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13933_low_3 (Length: 397)
Name: NF13933_low_3
Description: NF13933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13933_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 95 - 381
Target Start/End: Complemental strand, 43915595 - 43915309
Alignment:
| Q |
95 |
tgggattgggcatgggcctaggatcgggcttattgatcttgatttcaggcatggacgcagcacgttgaagcgcaggagagaaatcttcaggaagtggtgg |
194 |
Q |
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| T |
43915595 |
tgggattgggcatgggcctaggatcgggcttattgatcttgatttcaggcatggaagcagcacgttgaagcgcaggagagaaatcttcaggaagtggtgg |
43915496 |
T |
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| Q |
195 |
tggaggaagagggatgtcgaagggtttttgaggtggttgtagtactggtatgtaggaattatcaccgatggtggttgattgaggattggcaacttcgccg |
294 |
Q |
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| T |
43915495 |
tggaggaagagggatgtcgaagggtttttgaggtggttgtagtactggtatgtaggaattatcaccgatggtggttgattgaggattggcaacttcgccg |
43915396 |
T |
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| Q |
295 |
tgagaaaagtcacctaaggcggcgccggtgtttttaagggaggttgagtaggcggtgtgagcggcggcgaaagcattacgagatgaa |
381 |
Q |
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| T |
43915395 |
tgagaaaagtcacctaaggcggcgccggtgtttttaagggaggttgagtaggcggtgtgagcggcggcgaaagcattacgagatgaa |
43915309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 102 - 261
Target Start/End: Original strand, 37399949 - 37400102
Alignment:
| Q |
102 |
gggcatgggcctaggatcgggcttattgatcttgatttcaggcatggacgcagcacgttgaa---gcgcaggagagaaatcttcaggaagtggtggtgga |
198 |
Q |
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| T |
37399949 |
gggcatgggcctaggatcgggattattgatcttgatttcagacatggaagcagcatgttgaagaggtgaaggggagaaa---tcgggaagtaatggtgga |
37400045 |
T |
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| Q |
199 |
ggaagagggatgtcgaagggtttttgaggtggttgtagtactggtatgtaggaattatcaccg |
261 |
Q |
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| T |
37400046 |
gtaagagggatgttgaagggtttttgaggtg------gtactggtatgtaggaattatcaccg |
37400102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 1297422 - 1297560
Alignment:
| Q |
95 |
tgggattgggcatgggcctaggatcgggcttattgatcttgatttcaggcatggacgcagcacgttgaagcg-----caggagagaaatcttcaggaagt |
189 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||| || |||||| |
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| T |
1297422 |
tgggcttgggcatgggcctaggatcaggcttattgatcttgatttcagacatggaagcagcaagttgaagaggtgaaggggagagaaa---tcgggaagt |
1297518 |
T |
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| Q |
190 |
ggtggtggaggaagagggatgtcgaagggtttttgaggtggt |
231 |
Q |
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| T |
1297519 |
gatggtggaggaagagggttgtcgaagggtttttgaggtggt |
1297560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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