View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13933_low_4 (Length: 379)
Name: NF13933_low_4
Description: NF13933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13933_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 9214030 - 9213673
Alignment:
| Q |
1 |
ttattgttgtaagtgcatgagattatgcatgttattttcaagtactccaacttaattcatctgccaatgtaaattaatgttgttgtttttgcagggttgt |
100 |
Q |
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| T |
9214030 |
ttattgttgtaagtgcatgagattatgtatgttattttcaagtactccaacttaattcatctgctaatgtaaattaatgttattgtttttgcagggttgt |
9213931 |
T |
|
| Q |
101 |
cagcttgggaaaaggtctatgatggctgctactgacttgttagctgctgtaagcatttcttctttcaattgctaatatttacagtgcaatagttgattgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
9213930 |
cagcttgggaaaaggtctatgatggctgctactgacttgttagctgctgtaagcatttcttctttcaattgctaatatttacattgcagtagttgat--- |
9213834 |
T |
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| Q |
201 |
tgcagttgaaaaaagtttcctagtttgtttgactgtcatctttcattcagcttcctttcaattcccccattcacttcttgttcgagtttggacctattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
9213833 |
tgcagttgaaaaaagtttcctagtttgtttgactgtcatctttcattcagct---tttaaattcccccattcacttcttgttcgactttggacctattat |
9213737 |
T |
|
| Q |
301 |
ttttgttgaatgctagatgatacaaaacctgatagagaaaacaaaaatagtttgtactactttc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213736 |
ttttgttgaatgctagatgatacaaaacctgatagagaaaacaaaaatagtttgtactactttc |
9213673 |
T |
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