View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13933_low_6 (Length: 231)
Name: NF13933_low_6
Description: NF13933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13933_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 43458465 - 43458320
Alignment:
| Q |
47 |
aagaagctgatttctcaaatccagaatattgaactcaaatttgtaaaaattgaaacccaacttctatttgtagttaggaaaatgtgaaagaaattgtcca |
146 |
Q |
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| T |
43458465 |
aagaagatgatttctcaaatccaaaatattgaactcaaatttgtaaaaattgaaacccaacttctatttgtagttaggaaaatgtgaaagaaattgtcca |
43458366 |
T |
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| Q |
147 |
ccatcaaaatttgtgattcaataattttctgcatttatcatgctgg |
192 |
Q |
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| T |
43458365 |
ccatcaaaatttgtgattcaataattttctgcatttaccatgctgg |
43458320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 36940551 - 36940701
Alignment:
| Q |
25 |
aagaactttgataaagaagatgaagaagctgatttctcaaatccagaatattgaactcaaatttgtaaaaattgaaacccaacttctatttgtagttagg |
124 |
Q |
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| T |
36940551 |
aagaagtttgataaagaagatgcagaagctgatttaa-agatccaaaatattgaacccaaatttgtaaatattaaaacccaacttcaatttgtattta-- |
36940647 |
T |
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| Q |
125 |
aaaatgtgaaagaaattgtccaccatcaaaatttgtgattcaataattttctgcat |
180 |
Q |
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| T |
36940648 |
agaatgttaa--aaattgtccaccattaaaatttctgattcaacaattttctgcat |
36940701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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