View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13934_high_4 (Length: 241)
Name: NF13934_high_4
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 45907906 - 45907736
Alignment:
| Q |
14 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtaaaatggaannnnnnncaaactttgaaagtcgagttcaagaagtttctttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
45907906 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtgaaatggaatttttttcaatctttgaaagccgagttcaagaagtttctttg |
45907807 |
T |
|
| Q |
114 |
atgattactctcatttttcttaaaaattaagttagattgaaaggagtacatttgaattgatactcaaatag |
184 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45907806 |
atgattcctctcctttttcttaaaaattaagttagattgaatggagtacatttgaattgatactcaaatag |
45907736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 39773483 - 39773295
Alignment:
| Q |
14 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtaaaatggaannnnnnn-caaactttgaaagtcgagttcaagaagtttcttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
39773483 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtgaaatggaattttttttcaaactttgaaagccgagttcaagaagtttcttt |
39773384 |
T |
|
| Q |
113 |
gatgattactctcatttttcttaaaaat-taagttagattgaaaggagtacatttgaattgatactcaaatagcaggtaaatctaaaat |
200 |
Q |
| |
|
||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
39773383 |
gatgattactctcttttttttaaaaaaaataagttagattgaaaggagtacatttgaattgaaactcaaatagcatgtaaatctaaaat |
39773295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 4784083 - 4783897
Alignment:
| Q |
14 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtaaaatggaannnnnnn-caaactttgaaagtcgagttcaagaagtttcttt |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
4784083 |
agggagaaggaaattaccaaagttttgaaaggaactagtgcacaaccgtgaaatgggtttttttttcaaactttgaaagccgagttcaagaagtttcttt |
4783984 |
T |
|
| Q |
113 |
gatgattactctcatttttcttaaaaattaagttagattgaaaggagtacatttgaattgatactcaaatagcaggtaaatctaaaat |
200 |
Q |
| |
|
||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4783983 |
gatgattactctccttttt-taaaaaaataagttagattgaaaggagtacatttgaattgaaactcaaatagcaggtaaatctaaaat |
4783897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 22917435 - 22917551
Alignment:
| Q |
14 |
agggagaaggaaattaccaaagctttgaaaggaactagtgcacaaccgtaaaatggaannnnnnncaaactttgaaagtcgagttcaagaagtttctttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
22917435 |
agggagaaggaaattaccaaagctttgaaatgaactagtgcacaaccgtgaaatggaatttttttcaaactttgaaagccgagttcaagaagattctttg |
22917534 |
T |
|
| Q |
114 |
atgattactctcatttt |
130 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
22917535 |
atgattactctcctttt |
22917551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 22917899 - 22917964
Alignment:
| Q |
135 |
aaaaattaagttagattgaaaggagtacatttgaattgatactcaaatagcaggtaaatctaaaat |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22917899 |
aaaaaataagttagattgagaggagtacatttgaattgaaactcaaatagcaggtaaatctaaaat |
22917964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 13715141 - 13714951
Alignment:
| Q |
14 |
agggagaaggaaattaccaaagcttt-gaaaggaactagtgcacaaccgtaaaatggaannnnnnn-caaactttgaaagtcgagttcaagaagtttctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
13715141 |
agggagaaggaaattaccaaagcttttgaaaggaactagtgcacaaccgtgaaatggaattttttttcaaactttgaaagc---gttcaagaagtttctt |
13715045 |
T |
|
| Q |
112 |
tgatgattactctcatttttctt-----aaaaattaagttagattgaaaggagtacatttgaattgatactcaaatagcaggtaaatctaaaat |
200 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13715044 |
tgatgattactctcctttttttttaaaaaaaaaataagttagattgaaaggagtacatttgaattgaaactcaaatagcaggtaaatctaaaat |
13714951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 4848884 - 4848999
Alignment:
| Q |
18 |
agaaggaaattaccaaagctttgaaaggaactagtgcacaaccgt-aaaatggaannnnnnn-caaactttgaaagtcgagttcaagaagtttctttgat |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4848884 |
agaaggaaattaccaaagctttgaaagaaactagtgcacaaccgtgaaaatggaattttttttcaaactttgaaagccgagttcaagaagtttctttgat |
4848983 |
T |
|
| Q |
116 |
gattactctcattttt |
131 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
4848984 |
gattactctccttttt |
4848999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University