View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13934_high_5 (Length: 239)
Name: NF13934_high_5
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 109033 - 108882
Alignment:
| Q |
71 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagta |
170 |
Q |
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| T |
109033 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagta |
108934 |
T |
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| Q |
171 |
gcaaaacatctgtgaaaccatgttttgcatattgggtccagaagccgaatat |
222 |
Q |
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| T |
108933 |
gcaaaacatctctgaaaccatgttttgcatattgggtccagaagccgaatat |
108882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 90190 - 90095
Alignment:
| Q |
71 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttaccca |
167 |
Q |
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| T |
90190 |
aattcagtacaaattagcaattttgcataacaattaatctacagaagacacaaaaatagaggaaggtgc-aagtcatcatgacattcaagttaccca |
90095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 109131 - 109057
Alignment:
| Q |
1 |
acaacatttgtaggactagccacatttaaagtttctgctatatatacttggccttattttagaaacacttaattcagta |
79 |
Q |
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| T |
109131 |
acaacatttgtaggactagccacatttaaagttgctgc----tatacttggccttattttagaaacacttgattcagta |
109057 |
T |
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