View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13934_low_1 (Length: 791)
Name: NF13934_low_1
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 1 - 775
Target Start/End: Complemental strand, 31908446 - 31907672
Alignment:
| Q |
1 |
cttctaaaagtgcttcatccaaattatcttcgaattttatcatttgaagatcaaaaatatatgtatgatctggttcaacggacgaacggggaaatctatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
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| T |
31908446 |
cttctaaaagtgcttcatccaaattatcttcgaattttatcatttgaagatcaaaaatatatgtatgatctggttcaacggacaaatggggaaatctgtc |
31908347 |
T |
|
| Q |
101 |
cctagagtcaagtttacattcgttgccattgatgatcacgatgggatagattgtagatttgacaaatatcgaactggggacaagacaaagtgctatagca |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
31908346 |
cctagagtcaagtttacattcattgccattgatgatcacgatgggatagattgtagattcgacaaatatcgaactgggaacaagacaaagtgctatagca |
31908247 |
T |
|
| Q |
201 |
gggaacttgttacgaaaccaaaataaaattgacccattgctgctacagtgctcaaaccaatctggaattcttgatcttggcaaataaaacatggtacttc |
300 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31908246 |
gggaacttgttacggaaccaaaagaaacttgacccattgctgctacagtgctcaaaccaatctggaattcttgatcttggcaaataaaacatggtacttc |
31908147 |
T |
|
| Q |
301 |
cagcttcatgcaattcctgttagtcataaaagttcataatagcaaaatttagtactttattatataacttacatcatataaattatattnnnnnnncatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
31908146 |
cagcttcatgcaattcctgttagtcataaaagttcataatagcaaaatttagtactttattatataacttatatcatataacttatattaaaaaaacatt |
31908047 |
T |
|
| Q |
401 |
taaaaaacctgattcataaacatttctgtacaggtccaagatttgcatcctcgtgcatacaatattttcaagtttggcgctattcctctaacttcttgaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31908046 |
taaaaaacctgattcataaacatttctgtacaggtcaaagatttgcatcctcgtgcatacaatattttcaagtttggcgctattcctctaacttcttgaa |
31907947 |
T |
|
| Q |
501 |
gataatggcattcatccacgcaaagttcccttaacaaatgacattcttttaggcattctggaagaattgtgaaattattatgggctaaatgtaattcttt |
600 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
31907946 |
gataatggcattcatccacgcaaagtacccttaacaaatgacattcttttatgcattctgggagaattgtgaaattattatgggctaagtgtaattcttt |
31907847 |
T |
|
| Q |
601 |
cacattaacaaaccatgtgagagttattggaacaaattcatctgagagattgcagaatgcaagacgaagagattctacgtttgaagaaaccattgagctc |
700 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
31907846 |
cacattaacaaaccatgtgagaattattggaacaaattcatctgagagattgcagaatgtaagacgaagagattctacgtttgaaggaaccattgagctc |
31907747 |
T |
|
| Q |
701 |
actttatcttcagcctcgtctgattttgggaattgccatccttctgaaacccagccaattatctcaactagtttt |
775 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31907746 |
actttatcttcagcctcatctgattttgggaattgccatccttctgaaacccagccaattatttcaactagtttt |
31907672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 603
Target Start/End: Complemental strand, 35986293 - 35986154
Alignment:
| Q |
464 |
attttcaagtttggcgctattcctctaacttcttgaagataatggcattcatccacgcaaagttcccttaacaaatgacattcttttaggcattctggaa |
563 |
Q |
| |
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|||| ||||||||| | ||||||||||||||||||||||| ||||| | ||||| ||| || | || ||||||||||||| | |||||| |||| |
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| T |
35986293 |
atttccaagtttggtacaattcctctaacttcttgaagatattggcaataatccaaattaaggtctgtcaaaaaatgacattcttggatgcattccggaa |
35986194 |
T |
|
| Q |
564 |
gaattgtgaaattattatgggctaaatgtaattctttcac |
603 |
Q |
| |
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||||||||||||||||||| || || |||||||||||| |
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| T |
35986193 |
gaattgtgaaattattatgcgccaagcttaattctttcac |
35986154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 16694207 - 16694171
Alignment:
| Q |
294 |
gtacttccagcttcatgcaattcctgttagtcataaa |
330 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
16694207 |
gtacttccagcttcatgcaattcctgttagtcgtaaa |
16694171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 5918516 - 5918569
Alignment:
| Q |
180 |
acaagacaaagtgctatagcagggaacttgttacgaaaccaaaataaaattgac |
233 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
5918516 |
acaacacaaagaactatggcagggaacttgttacgaaaccagaatgaaattgac |
5918569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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