View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13934_low_2 (Length: 709)

Name: NF13934_low_2
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13934_low_2
NF13934_low_2
[»] chr2 (1 HSPs)
chr2 (16-709)||(43900963-43901657)


Alignment Details
Target: chr2 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 16 - 709
Target Start/End: Complemental strand, 43901657 - 43900963
Alignment:
Q  16 cattatctgctgctgcaggggaagcaggcaatcccaaaaacacttttcccgacgttaacgactttgtccatcgcttccacgaatccaacaagcggttaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901657 cattatctgctgctgcaggggaagcaggcaatcccaaaaacacttttcccgacgttaacgactttgtccatcgcttccacgaatccaacaagcggttaac 43901558  T
Q  116 ctcgctttcactatagtcacattcaggattgttgtaaaactgtatccaaacatagtcaaaaatgcccgtttcaagtgcgacacctaattctccatcagg- 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||     
T  43901557 ctcgctttcactatagtcacattcaggattgttgtaaaactgtatccaaacatagtcaaaaacgcccgtttcaagtgcgacgcctaattctccatcaggg 43901458  T
Q  215 tatggacattgaggtgctgcacttaagtaaacattttgtgttgaagtgttacgtgacttaagaaaacgtgcaagttcttcccaatgttgttggttttgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901457 tatggacattgaggtgctgcacttaagtaaacattttgtgttgaagtgttacgtgacttaagaaaacgtgcaagttcttcccaatgttgttggttttgtt 43901358  T
Q  315 ttcctttggagnnnnnnncaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaa 414  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901357 ttcctttggagtttttttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttccacaa 43901258  T
Q  415 gtaatcagaaacattttttgcatcatcagtggaacctaaaccatattctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901257 gtaatcagaaacattttttgcatcatcagtggaacctaaaccatattctccatctgctccgccaattgaaagcaagactttgatccttttcatttggcaa 43901158  T
Q  515 ttcttaatgtgtgtgcttaacattgtgcaatcattggaagaagggtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaa 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901157 ttcttaatgtgtgtgcttaacattgtgcaatcattggaagaagggtcacaatgatctgctaagttgatttcaggtgttgttccattcccaaatttgttaa 43901058  T
Q  615 gaaaagctatgattacataggagtagttgttgtagtttccttttgcacatgtttctgttagggtaccctcattgttattttgaccccaataaatt 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901057 gaaaagctatgattacataggagtagttgttgtagtttccttttgcacatgtttctgttagggtaccctcattgttattttgaccccaataaatt 43900963  T

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