View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13934_low_3 (Length: 648)
Name: NF13934_low_3
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 33 - 630
Target Start/End: Original strand, 52444737 - 52445333
Alignment:
| Q |
33 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattcacaaacaataacaataatagattgctctatgagcaaacataaacacacaaaa |
132 |
Q |
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| T |
52444737 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattca-aaacaataacaataatagattgctctatgagcaaacataaacacaaaaaa |
52444835 |
T |
|
| Q |
133 |
tgcaaaaagtacttgctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
232 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444836 |
tgcaaaaagtactttctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
52444935 |
T |
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| Q |
233 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgtgaaagtagtatggagcctcccatctaagctggcaaagagg |
332 |
Q |
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| T |
52444936 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgcgaaagtagcatggagcctcccatctaagctggcaaagagg |
52445035 |
T |
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| Q |
333 |
cctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcaagaaccttagcaatcc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
52445036 |
cctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcacggaccttagcaatcc |
52445135 |
T |
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| Q |
433 |
taacacaaagataaggtgttgcactgccacgcctgtgcatgaccctaatttgcatcatgcactgctccacggacttgtcagccatgtcatgctcgtacac |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52445136 |
taacacaaagataaggtgttgcactgccacgcctgtgcatgaccttaatttgcatcatgcactgctccacgtacttgtcagccatgtcatgctcgtacat |
52445235 |
T |
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| Q |
533 |
aatgtcattcttgatgacatccatatgatattcatgctcagccactcctttgtaaagtatgacctttctaacatacttaaatttgtccacgagaacga |
630 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445236 |
aatgtcattcttgatgacatccatatgatatccatgctcagccactccttcgtaaagtatgacctttctaacatacttaaatttgtccacgagaacga |
52445333 |
T |
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