View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13934_low_4 (Length: 268)
Name: NF13934_low_4
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 30484342 - 30484101
Alignment:
| Q |
15 |
aagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctcgaatctcattccttccatgtctgatgag |
114 |
Q |
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| T |
30484342 |
aagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctggaatctcattccttccatgtctgatgag |
30484243 |
T |
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| Q |
115 |
gccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaattgttgt |
214 |
Q |
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| T |
30484242 |
gccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaattgttgt |
30484143 |
T |
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| Q |
215 |
ttgtttctttagaaaattgaagaagattcatcaaagaattat |
256 |
Q |
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| T |
30484142 |
ttgtttctttagaaaattgaagaagattcatcaaagaattat |
30484101 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 39014840 - 39014904
Alignment:
| Q |
133 |
tcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaac |
197 |
Q |
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| T |
39014840 |
tcttccaaatccatgttccacaagaatccatatccatcatcacctttggaactaatttgagtaac |
39014904 |
T |
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