View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13934_low_5 (Length: 243)
Name: NF13934_low_5
Description: NF13934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13934_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 3431837 - 3432053
Alignment:
| Q |
8 |
aagaatatagtcagtaattggttcgtaattcgcttcgctacttgatacgagctctagtacacaaccatcaaagtattaggtacgaaggagtacatatagt |
107 |
Q |
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| T |
3431837 |
aagaacatagtcaataattggttcgtaattcgcttcgctacttgatacgagttctagtacacaaccctcaaagtattaggtacgaaggagtacatatagt |
3431936 |
T |
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| Q |
108 |
cgatacactattttaattcatggtatgatttaatatattcaacgctacatatatatgaatatgttttcaaattatacaaatgtaaagccatatttacaca |
207 |
Q |
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| T |
3431937 |
cgatacactattttaattcatggtatgatttaatatattcaacgctac----atatgaatatgttttcaaattatacaaatgtaaagccatatttacaca |
3432032 |
T |
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| Q |
208 |
gatgaaataatcaatataaat |
228 |
Q |
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| T |
3432033 |
gatgaaataatcaatataaat |
3432053 |
T |
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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 11913643 - 11913446
Alignment:
| Q |
32 |
gtaattcgcttcgctacttgatacgagctctagtacacaaccatcaaagt---attaggtacgaaggagta----catatagtcgatacactattttaat |
124 |
Q |
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| T |
11913643 |
gtaattcgcttcgttccttgatacgagctctattacacaaccctcaaagtattattaggtatgaaggagtacatgcatatagtcgatgcactatttcaaa |
11913544 |
T |
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| Q |
125 |
tcatggtatgatttaatatattcaacgctacatatatatgaatatgttttcaaattatacaaatgtaaagccatatttacacagatgaaataatcaatat |
224 |
Q |
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| T |
11913543 |
ttatggtatgatttaatatattaaacggcacct---tatgaatatgtttttaaattatacaaatgtaaagccatatttacac---tgaaataatcaatat |
11913450 |
T |
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