View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13935_low_1 (Length: 680)
Name: NF13935_low_1
Description: NF13935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13935_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 42 - 662
Target Start/End: Complemental strand, 899425 - 898805
Alignment:
| Q |
42 |
tgagtattgaattagagtgatgtacatttaatttttgaaactaaagggatttatttaaatacgtaaaaccaaaatgactaattaaacaataaatcttaat |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899425 |
tgagtattgaattagagtgatgtacatttaatttttgaaactaaagggatttatttaaatacgtaaaaccaaaatgactaattaaacaataaatcttaat |
899326 |
T |
|
| Q |
142 |
gtaaaagttgattctaaaatcaaaagttccaaattgtaggttcaaattagaattaaattttgagacaaaataaatttactctaaagcaattctacacctc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899325 |
gtaaaagttgattctaaaatcaaaagttccaaattgtaggttcaaattagaattaaattttgagacaaaataaatttactctaaagcaattctacacctc |
899226 |
T |
|
| Q |
242 |
tataatcaatattcactcatttataagtgaaactaaatgtacactaactacttctattttagtccgcaaaactgaaaaattaaaagatgatttttaaaac |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899225 |
tataatcaatattcactcatttataagtgaaactaaatgtacactaactacttctattttagtccgcaaaactgaaaaattaaaagatgatttttaaaac |
899126 |
T |
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| Q |
342 |
agttttacaaaattggatgaagctgaagatgaaaataaaatagttggatggtgaaaagattgatgaggaaattgctggtaacgataattatagaagtgga |
441 |
Q |
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| T |
899125 |
agttttacaaaattggatgaagctgaagatgaaaataaaatagttggatggtgaaaagattgatgaggaaattgctggtaacgataattatagaagtgga |
899026 |
T |
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| Q |
442 |
acaataagttcttgattataaaactcttggtatttgacaaaagctaaaagtgattttatgataatgtcttgtcataatactttcattccacaaaagaaag |
541 |
Q |
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| T |
899025 |
acaataagttcttgattataaaactcttggtatttgacaaaagctaaaagtgattttatgataatgtcttgtcacaatactttcattccacaaaagaaag |
898926 |
T |
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| Q |
542 |
tgcaataattttgataaggttacctaaatagctaccatcgacattaaaaatggtgcaacaacgattagatgagttccattaaacccatacatcctcaagt |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
898925 |
tgcaataattttgataaggttacctaaatagctaccatcgacattaaaaatggtgcaacaacgattagatgagttccattaaacccatacatcctcaagt |
898826 |
T |
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| Q |
642 |
tttgttgtcagatatatagag |
662 |
Q |
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| T |
898825 |
tttgttgtcagatatatagag |
898805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 4799298 - 4799336
Alignment:
| Q |
5 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
43 |
Q |
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| T |
4799298 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
4799336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 4804278 - 4804316
Alignment:
| Q |
5 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
43 |
Q |
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| T |
4804278 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
4804316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 4800455 - 4800493
Alignment:
| Q |
5 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
43 |
Q |
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| T |
4800455 |
gagagaaaagaaagatatcgattggtgcatcaaacgatg |
4800493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 22332166 - 22332128
Alignment:
| Q |
5 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
43 |
Q |
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| T |
22332166 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
22332128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 23834015 - 23834053
Alignment:
| Q |
5 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
43 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
23834015 |
gagagaaaagaaagataccgattggtgcatcaaacgatg |
23834053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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