View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13935_low_2 (Length: 580)

Name: NF13935_low_2
Description: NF13935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13935_low_2
NF13935_low_2
[»] chr2 (4 HSPs)
chr2 (19-343)||(33858439-33858760)
chr2 (424-564)||(33422471-33422610)
chr2 (59-138)||(11272549-11272628)
chr2 (74-138)||(13016037-13016101)
[»] chr8 (4 HSPs)
chr8 (57-139)||(36404050-36404132)
chr8 (57-125)||(37269843-37269911)
chr8 (59-125)||(42941259-42941325)
chr8 (71-125)||(9936427-9936481)
[»] scaffold0760 (1 HSPs)
scaffold0760 (57-125)||(1722-1790)
[»] chr4 (3 HSPs)
chr4 (59-145)||(16989625-16989712)
chr4 (59-125)||(2282262-2282328)
chr4 (343-392)||(16989885-16989933)
[»] chr6 (3 HSPs)
chr6 (59-145)||(2920915-2921002)
chr6 (59-145)||(18246525-18246612)
chr6 (57-139)||(32548928-32549009)
[»] chr7 (2 HSPs)
chr7 (59-126)||(31234744-31234811)
chr7 (71-125)||(42460101-42460155)
[»] chr3 (3 HSPs)
chr3 (59-145)||(1259272-1259359)
chr3 (59-145)||(37242560-37242647)
chr3 (59-145)||(53553630-53553716)
[»] chr1 (2 HSPs)
chr1 (71-125)||(32774127-32774181)
chr1 (64-132)||(46594856-46594924)
[»] chr5 (1 HSPs)
chr5 (80-125)||(40296118-40296163)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 33858760 - 33858439
Alignment:
Q  19 aagcaaatcatccaaactttaattgacttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaataga 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33858760 aagcaaatcatccaaactttaattggcttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaataga 33858661  T
Q  119 agatgaacgtggctgttttttgaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtgnnnnnnnnggctggtccggtttt 218  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  33858660 agatgaacgtggctgtttttttaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtg--ttttttggctggtccggtttt 33858563  T
Q  219 aagggggg-tttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtgcnnnnnnnnnnnctgcttgttctttgcttctgc 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            || ||||||||||||||||||    
T  33858562 aaggggggttttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg--tgctttttttctacttgttctttgcttctgc 33858465  T
Q  318 tgtgttttgtaacagaaggcaggact 343  Q
    ||||||||||||||||||||||||||    
T  33858464 tgtgttttgtaacagaaggcaggact 33858439  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 424 - 564
Target Start/End: Complemental strand, 33422610 - 33422471
Alignment:
Q  424 ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatctgtggtca 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33422610 ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatttgtggtca 33422511  T
Q  524 atgtttgctttgggcacagcaacaataactgtatctttctt 564  Q
    ||| ||||||| ||||||||| |||||||||||||||||||    
T  33422510 atg-ttgcttttggcacagcaccaataactgtatctttctt 33422471  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 11272549 - 11272628
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 138  Q
    |||| |||||| |||||||| |||||||| ||||||| |||| |||| || | ||||||||||||||||  |||||||||    
T  11272549 aagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgttttt 11272628  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 13016101 - 13016037
Alignment:
Q  74 ctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 138  Q
    ||||| ||||||||||||||||||||  |||| || || ||||||||||||| |  |||||||||    
T  13016101 ctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgttttt 13016037  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 36404132 - 36404050
Alignment:
Q  57 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 139  Q
    |||||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  36404132 ttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagatgaaggtgactgtttttt 36404050  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 37269911 - 37269843
Alignment:
Q  57 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  37269911 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 42941259 - 42941325
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||||||||    
T  42941259 aagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 9936427 - 9936481
Alignment:
Q  71 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||||| ||||||||||||||||| ||| || | || ||||||||||||||||    
T  9936427 ttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaa 9936481  T

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Target: scaffold0760 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 1790 - 1722
Alignment:
Q  57 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  1790 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 16989625 - 16989712
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  16989625 aagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 16989712  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 2282262 - 2282328
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||||| || |||||||| ||||| ||||||| ||| ||| | ||||| ||||||||||||||||    
T  2282262 aagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 16989885 - 16989933
Alignment:
Q  343 ttgttttgttgtaacagctagcctctttttgcacttctggtgcttggctt 392  Q
    |||||| ||||||||||||||| |||||| ||||||| ||||||||||||    
T  16989885 ttgtttggttgtaacagctagc-tcttttagcacttccggtgcttggctt 16989933  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 2921002 - 2920915
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||| | |||||||||||    
T  2921002 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatct 2920915  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 18246612 - 18246525
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||| |||||| |||||||||||    
T  18246612 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 18246525  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 32548928 - 32549009
Alignment:
Q  57 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 139  Q
    |||||| |||||| ||| |||| ||| ||||||||| ||||||| || ||||||||||||||||||||| |  ||||||||||    
T  32548928 ttaagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgtttttt 32549009  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 31234811 - 31234744
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaac 126  Q
    |||| |||||| |||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||    
T  31234811 aagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 42460155 - 42460101
Alignment:
Q  71 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||||| ||||||| ||||||||||||| |||| || ||||||||||||||||    
T  42460155 ttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaa 42460101  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 1259359 - 1259272
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  1259359 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 1259272  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 37242647 - 37242560
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  37242647 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 37242560  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 53553716 - 53553630
Alignment:
Q  59 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttttgaatct 145  Q
    |||| |||||| |||||||| ||||||||||||||||||||| |||| || |||||||| ||||||| |  ||||||||||| ||||    
T  53553716 aagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatct 53553630  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 32774181 - 32774127
Alignment:
Q  71 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||    
T  32774181 ttcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 46594924 - 46594856
Alignment:
Q  64 agcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggct 132  Q
    ||||||||| ||||| || ||||||||||| ||||||  ||||||| ||||||| ||||||| ||||||    
T  46594924 agcttcctttctcttttacgagtggacttgaaatcctaaagaatgtttaaataggagatgaaagtggct 46594856  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  80 tatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 125  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

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