View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13935_low_4 (Length: 480)

Name: NF13935_low_4
Description: NF13935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13935_low_4
NF13935_low_4
[»] chr1 (14 HSPs)
chr1 (99-476)||(14924984-14925366)
chr1 (93-244)||(11469099-11469252)
chr1 (93-183)||(11469705-11469795)
chr1 (98-183)||(31787501-31787586)
chr1 (98-183)||(31788216-31788301)
chr1 (93-183)||(14924692-14924782)
chr1 (104-170)||(7464023-7464089)
chr1 (104-170)||(11426882-11426948)
chr1 (104-170)||(11427460-11427526)
chr1 (104-170)||(7463444-7463510)
chr1 (104-170)||(37889908-37889974)
chr1 (104-170)||(37890486-37890552)
chr1 (102-170)||(2687680-2687748)
chr1 (34-82)||(43275804-43275852)
[»] scaffold0189 (2 HSPs)
scaffold0189 (94-476)||(12501-12888)
scaffold0189 (93-183)||(12202-12292)
[»] chr4 (13 HSPs)
chr4 (121-469)||(10420963-10421315)
chr4 (93-244)||(6246802-6246955)
chr4 (93-183)||(6247410-6247501)
chr4 (93-183)||(10421521-10421611)
chr4 (93-183)||(15481510-15481600)
chr4 (98-181)||(15481058-15481141)
chr4 (135-181)||(50709719-50709765)
chr4 (109-178)||(53664246-53664315)
chr4 (109-181)||(50710359-50710431)
chr4 (111-170)||(2093865-2093924)
chr4 (129-171)||(13856645-13856687)
chr4 (28-82)||(37306433-37306487)
chr4 (129-181)||(53665028-53665080)
[»] chr3 (6 HSPs)
chr3 (292-476)||(45500838-45501022)
chr3 (18-93)||(52366602-52366677)
chr3 (93-183)||(38337417-38337507)
chr3 (98-181)||(38336967-38337048)
chr3 (100-179)||(44022031-44022110)
chr3 (106-168)||(15450256-15450318)
[»] chr8 (12 HSPs)
chr8 (93-244)||(12350528-12350684)
chr8 (93-183)||(12349985-12350075)
chr8 (98-183)||(43971301-43971386)
chr8 (98-178)||(39257657-39257737)
chr8 (98-183)||(43972026-43972111)
chr8 (93-181)||(43924508-43924596)
chr8 (93-183)||(43924958-43925048)
chr8 (105-181)||(38686333-38686409)
chr8 (129-178)||(38687000-38687049)
chr8 (124-181)||(39258391-39258448)
chr8 (109-178)||(33802318-33802387)
chr8 (129-181)||(33801553-33801605)
[»] chr5 (3 HSPs)
chr5 (102-182)||(4554684-4554764)
chr5 (93-244)||(4555269-4555419)
chr5 (104-170)||(6805910-6805976)
[»] chr2 (14 HSPs)
chr2 (98-183)||(4993627-4993712)
chr2 (98-183)||(4975719-4975804)
chr2 (98-181)||(4976447-4976530)
chr2 (98-181)||(4994354-4994437)
chr2 (134-181)||(42369702-42369749)
chr2 (105-178)||(8536167-8536240)
chr2 (129-181)||(8536828-8536880)
chr2 (93-181)||(37545694-37545782)
chr2 (93-181)||(41519867-41519955)
chr2 (28-87)||(34142236-34142295)
chr2 (99-173)||(42370900-42370974)
chr2 (99-143)||(1271255-1271299)
chr2 (28-80)||(27183781-27183833)
chr2 (28-80)||(27833323-27833375)
[»] chr6 (3 HSPs)
chr6 (98-183)||(27763436-27763521)
chr6 (44-82)||(10067283-10067321)
chr6 (23-87)||(4595766-4595830)
[»] chr7 (6 HSPs)
chr7 (100-181)||(46757449-46757530)
chr7 (28-88)||(29310443-29310503)
chr7 (100-183)||(46759202-46759285)
chr7 (28-82)||(41873463-41873517)
chr7 (100-181)||(27599236-27599317)
chr7 (28-76)||(32377291-32377339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (106-168)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (99-143)||(29938-29982)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 99 - 476
Target Start/End: Complemental strand, 14925366 - 14924984
Alignment:
Q  99 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatatt 198  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||        |||||||    
T  14925366 aagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt-ccatatt 14925268  T
Q  199 ggcccaccacttgcagctgccccaactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 292  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |      ||||||||||||||||||||||||||||||||||||||||||||||    
T  14925267 ggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 14925168  T
Q  293 aacagagtgatggcacatgttggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 392  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14925167 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 14925068  T
Q  393 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14925067 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 14924984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 11469099 - 11469252
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga--nnnnnnn 190  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  11469099 aaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 11469198  T
Q  191 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 244  Q
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11469199 ttcatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 11469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 11469795 - 11469705
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  11469795 aaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacaccaga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 31787501 - 31787586
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  31787501 gaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 31788301 - 31788216
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| |||||||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 14924692 - 14924782
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| ||||||||||||| |||||||||| | ||| || || ||||||||||| |||||||||||||||| |||||||||    
T  14924692 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 7464089 - 7464023
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 7464023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 11426882 - 11426948
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||| ||||||||||||| |||||||||| |||||||| ||||| |||||| | |||||||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagac 11426948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 11427526 - 11427460
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||||| |||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  11427526 gttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 11427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 7463444 - 7463510
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||| ||||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagac 7463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||| ||||||||||||| | |||||||| |||||||| ||||| |||||| | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 37890552 - 37890486
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||||| |||||||||||||||||||||| ||| |||| ||| |||||||| |  ||||||||||||    
T  37890552 gttttctaccatgggaaaactaattttgaccatcagattaacaagagaacacaactttatcatagac 37890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 2687748 - 2687680
Alignment:
Q  102 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||||| |||||||||||||| || ||||||   |||||| |||||  ||||||| |||||||||||||    
T  2687748 ttgtttcccaccatgggaaaattatttttgacagttagattaactaaggaacatagttttatcatagac 2687680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 43275852 - 43275804
Alignment:
Q  34 gtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 82  Q
    |||||||| |||||| ||| ||||||||||||||||| |||| ||||||    
T  43275852 gtgagacccacatgaatttcactcaataaaaaagtgagtgttggagaga 43275804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 94 - 476
Target Start/End: Complemental strand, 12888 - 12501
Alignment:
Q  94 aagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnncc 193  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||          ||    
T  12888 aagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccat-ttttttttcc 12790  T
Q  194 atattggcccaccacttgcagctgccccaactctctttcctttctctcctt------tctggcgacgcttgcatgcttcaacaattccaggatgaatata 287  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||    
T  12789 atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggtgacgcttgcatgcttcaacaattccaggatgaatata 12690  T
Q  288 agaggaacagagtgatggcacatgttggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 387  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 12590  T
Q  388 acctctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 476  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  12589 acctctattgtctcgcttgcagtattataaagtgactaccaagaatggtgaagatccatggtagattgagtggtgaatctttgttcctc 12501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 12202 - 12292
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| |||||||| ||||| ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  12202 aaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 121 - 469
Target Start/End: Original strand, 10420963 - 10421315
Alignment:
Q  121 aactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatattggcccaccacttgcagctgccc 220  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||        |||||||| ||||||||||||||||||||    
T  10420963 aactaattttgaccattagataaactagataacatacttttatcatagacactcaacaccagattttttt-ccatattgacccaccacttgcagctgccc 10421061  T
Q  221 caactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgttg 314  Q
    ||||||||||| |||||||||||| |      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10421062 caactctcttttctttctctccttcccgaatttggtgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 10421161  T
Q  315 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctctattgtctcgtttgcagtatta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10421162 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacatcatca-ctgattcacctctattgtctcgtttgcagtatta 10421260  T
Q  415 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 10421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 6246802 - 6246955
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca--gannnnnnn 190  Q
    |||| ||| |||||| |||||||||||||  ||||||||| ||||||||||  |||||||||||||||||||||||||||| |||| ||               
T  6246802 aaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaacatcattttttttttt 6246901  T
Q  191 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 244  Q
     |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6246902 tccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 6246955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 6247501 - 6247410
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatac-ttttatcatagacacttaacaccaga 183  Q
    |||| ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  6247501 aaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 10421611 - 10421521
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  10421611 aaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 15481600 - 15481510
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| |||| ||||||||||||||||||| |  ||||| || ||||||||||| |||||||||||| ||| |||||||||    
T  15481600 aaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacaccaga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 15481058 - 15481141
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||| ||  ||||||||| |||||||||| | |||||| || ||||||||||| ||||||||||||| || |||||||    
T  15481058 gaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 50709719 - 50709765
Alignment:
Q  135 attagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  50709719 attagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 53664246 - 53664315
Alignment:
Q  109 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 178  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| ||||    
T  53664246 ccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 50710431 - 50710359
Alignment:
Q  109 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||   ||||||||||||||| |||||||    
T  50710431 ccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 2093924 - 2093865
Alignment:
Q  111 accatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||||||||||  || | ||||||||||||| || || ||||||||||||||||||||||    
T  2093924 accatgggaaagttattattgatcattagatcaaatatagaacatacttttatcatagac 2093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  129 ttgatcattagataaactagagaacatacttttatcatagaca 171  Q
    |||| ||||||||||| |||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 37306487 - 37306433
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 82  Q
    |||||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  37306487 aaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagaga 37306433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 53665080 - 53665028
Alignment:
Q  129 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 292 - 476
Target Start/End: Complemental strand, 45501022 - 45500838
Alignment:
Q  292 gaacagagtgatggcacatgttggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 391  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45501022 gaacagagtgatggcacatgctggaacttgatttttgagaatttgatcccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 45500923  T
Q  392 ctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 476  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45500922 ctattatctcgtttgcagtattataaagtggctaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 45500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 52366602 - 52366677
Alignment:
Q  18 aatttcataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttcataaa 93  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52366602 aatttcatataaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttcataaa 52366677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 38337507 - 38337417
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  38337507 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 38336967 - 38337048
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||  ||||||| |||||||    
T  38336967 gaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  100 agttgttttccaccatgggaaaactaattttgatcattaga-taaactagagaacatacttttatcatagacacttaacac 179  Q
    |||||||||||||||||||||||  || ||||| ||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 15450256 - 15450318
Alignment:
Q  106 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 168  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  15450256 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 12350684 - 12350528
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga-----nnnn 187  Q
    |||| ||| |||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  12350684 aaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 12350585  T
Q  188 nnnnccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 244  Q
        |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  12350584 ttatccatattggcccaccacttgtagctgtcccaactctcttttctttctctcctt 12350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 12349985 - 12350075
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| ||||||||| |||||||||||| | ||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  12349985 aaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 43971301 - 43971386
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  43971301 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 39257657 - 39257737
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 178  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  39257657 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 43972111 - 43972026
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 43924508 - 43924596
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||| ||||| |||||||    
T  43924508 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 43925048 - 43924958
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||| |||||||||| |||||||| ||||  ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  43925048 aaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 38686333 - 38686409
Alignment:
Q  105 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  38686333 ttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 38687049 - 38687000
Alignment:
Q  129 ttgatcattagataaactagagaacatacttttatcatagacacttaaca 178  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  38687049 ttgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  124 taattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    ||||||| | |||||||||||||| |||||||||||||| | |||||||| |||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 33802387 - 33802318
Alignment:
Q  109 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 178  Q
    |||||||||||||   ||| |||| ||||| ||||| ||||||||||  |||||||||||||||| ||||    
T  33802387 ccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 33801553 - 33801605
Alignment:
Q  129 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  33801553 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 4554684 - 4554764
Alignment:
Q  102 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccag 182  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4554684 ttgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 4555419 - 4555269
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnc 192  Q
    |||| |||||||||| | ||||||||||| |||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||||| |        |    
T  4555419 aaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca-attttttttc 4555321  T
Q  193 catattggcccaccacttgcagctgccccaactctctttcctttctctcctt 244  Q
    |||||||||||||| |||||||||| |||||||||||||  ||||| |||||    
T  4555320 catattggcccaccgcttgcagctgtcccaactctcttttatttctttcctt 4555269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 6805976 - 6805910
Alignment:
Q  104 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 170  Q
    |||| |||||||||||||||||||||| | ||| ||||  || | |||||||| |||||||||||||    
T  6805976 gtttcccaccatgggaaaactaattttaaccatcagatttacaaaagaacataattttatcatagac 6805910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 4993627 - 4993712
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4993627 gaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 4975719 - 4975804
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| ||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4975719 gaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 4976530 - 4976447
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 4994437 - 4994354
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 42369702 - 42369749
Alignment:
Q  134 cattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  42369702 cattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 8536167 - 8536240
Alignment:
Q  105 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 178  Q
    |||||||||||||||||   ||| ||||  |||||||||| ||||||||||  |||||||||||||||| ||||    
T  8536167 ttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 8536880 - 8536828
Alignment:
Q  129 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  8536880 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 37545694 - 37545782
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| |||||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 41519955 - 41519867
Alignment:
Q  93 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||| |||||| ||| |||||||||||||  |  |||||| | ||| ||||| ||||||||||||||||| |||||||||  |||||||    
T  41519955 aaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 34142236 - 34142295
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 87  Q
    ||||| ||||||| ||||||| ||| |  ||||||||||||||||||| |||||||||||    
T  34142236 aaagtagtgagacatacatgaatttcatccaataaaaaagtgaatgtttgagagattgtt 34142295  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 42370974 - 42370900
Alignment:
Q  99 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacact 173  Q
    ||||||||| |||||||||||||   ||| |||  ||||||||||| | ||||| ||| ||||||||||||||||    
T  42370974 aagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacact 42370900  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1271255 - 1271299
Alignment:
Q  99 aagttgttttccaccatgggaaaactaattttgatcattagataa 143  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  1271255 aagttgttttccactatgggaaaactaattttaaccgttagataa 1271299  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 27183833 - 27183781
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 80  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27183833 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27183781  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 27833375 - 27833323
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 80  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27833375 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27833323  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 27763436 - 27763521
Alignment:
Q  98 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||||| |||||| ||||||||||||||||| | |||||| || ||||||||||| |||||||| ||||||| |||||||||    
T  27763436 gaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacaccaga 27763521  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 10067321 - 10067283
Alignment:
Q  44 catgagttttactcaataaaaaagtgaatgttagagaga 82  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10067321 catgagttttattcaataaaaaagtgattgttagagaga 10067283  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 4595830 - 4595766
Alignment:
Q  23 cataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 87  Q
    |||||||||||||||||| |||||   ||| ||||||||||| ||||| || |||||||| ||||    
T  4595830 cataaaaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagagagtgtt 4595766  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  100 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    ||||||||||||||||| ||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 29310503 - 29310443
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttc 88  Q
    |||||||||||||| |||||||||| || |||||||||||||| ||||||| ||| |||||    
T  29310503 aaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaagagtgttc 29310443  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 46759285 - 46759202
Alignment:
Q  100 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 183  Q
    |||||||| ||| ||| | ||| ||||| |||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||    
T  46759285 agttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccaga 46759202  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 41873517 - 41873463
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 82  Q
    |||||| ||||||  |||||||||| || |||||||||||||| |||||||||||    
T  41873517 aaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagaga 41873463  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 27599236 - 27599317
Alignment:
Q  100 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 181  Q
    |||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  27599236 agttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 32377339 - 32377291
Alignment:
Q  28 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgtta 76  Q
    |||||||| |||||||||| | |||||  ||||||||||||||||||||    
T  32377339 aaagtggtaagacctacataaattttatccaataaaaaagtgaatgtta 32377291  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 11935 - 11873
Alignment:
Q  106 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 168  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  11935 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 29982 - 29938
Alignment:
Q  99 aagttgttttccaccatgggaaaactaattttgatcattagataa 143  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  29982 aagttgttttccactatgggaaaactaattttaaccgttagataa 29938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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