View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13935_low_5 (Length: 449)
Name: NF13935_low_5
Description: NF13935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13935_low_5 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 4092 - 4517
Alignment:
| Q |
13 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4092 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgtt |
4191 |
T |
|
| Q |
113 |
gagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4192 |
gagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatgcaata |
4291 |
T |
|
| Q |
213 |
ttttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4292 |
ttttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaa |
4391 |
T |
|
| Q |
313 |
catatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtttcaactatccatca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4392 |
catatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgttccaactatccatca |
4491 |
T |
|
| Q |
413 |
ctgttattctcctatgataatgccat |
438 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4492 |
ctgttattctcctatgataatgccat |
4517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 35774380 - 35774168
Alignment:
| Q |
13 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
35774380 |
atcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattttg |
35774281 |
T |
|
| Q |
111 |
ttgagatg------caacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactat |
204 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| ||||| |
|
|
| T |
35774280 |
ttgagatgcgacatcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaactat |
35774185 |
T |
|
| Q |
205 |
atgcaatattttatggg |
221 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
35774184 |
aagcaatattttctggg |
35774168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 35848161 - 35848122
Alignment:
| Q |
13 |
atcatcatacaataatttccagaagtttatcaaagaggtt |
52 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
35848161 |
atcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 102 - 141
Alignment:
| Q |
13 |
atcatcatacaataatttccagaagtttatcaaagaggtt |
52 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
102 |
atcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University