View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13935_low_6 (Length: 406)
Name: NF13935_low_6
Description: NF13935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13935_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 4900470 - 4900074
Alignment:
| Q |
15 |
agtatcacaatctacaagttcttgttctgaaaggcttataaggtcccctgtcactattgcatttactccttctattgctccagtggaagagaatgaccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900470 |
agtatcacaatctacaagttcttgttctgaaaggcttataaggtcccctgtcactattgcatttactccttctattgctccagtggaagagaatgaccaa |
4900371 |
T |
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| Q |
115 |
caactacctacaaaatcagnnnnnnnnnn---cttaatatgcaaaattgagattcaaaagagtataaagggaaattagttgtgagttctaaaatataaat |
211 |
Q |
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| T |
4900370 |
caactacctacaaaatcagtttttttttttttcttaatatgcaaaattgagattcaaaagagtataaagggaaattagttgtgagttctaaaatataaat |
4900271 |
T |
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| Q |
212 |
aaccaaa--cttttaaagtgcataaaatatagaagcttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatctaaagagt |
309 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900270 |
aaccaaaaacttttaaagtgcataaaatatagaagcttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatctaaagagt |
4900171 |
T |
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| Q |
310 |
aaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcttgctaattggcttcttcaccttcgaaataaacttattcttgaactc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900170 |
aaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcttgctaattggcttcttcaccttcgaaataaacttattcttgaactc |
4900074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 4947867 - 4947468
Alignment:
| Q |
15 |
agtatcacaatctacaagttcttgttctgaaaggcttataaggtcccctgtcactattgcatttactccttctattgctccagtggaagagaatgaccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947867 |
agtatcacaatctacaagttcttgttctgaaaggcttataaggtcccctgtcactattgcatttactccttctattgctccagtggaagagaatgaccaa |
4947768 |
T |
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| Q |
115 |
caactacctacaaaatcagnnnnnnnnnnc--ttaatatgcaaaattgagattcaaaagagtataaagggaaattagttgtgagttctaaaatataaata |
212 |
Q |
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| T |
4947767 |
caactacctacaaaatcagtttttttttttctttaatatgcaaaattgagattcaaaagagtataaagggaaattagttgtgagttctaaaatataaata |
4947668 |
T |
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| Q |
213 |
accaaa--cttttaaagtgcataaaata-tagaagcttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatctaaagagt |
309 |
Q |
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| T |
4947667 |
accaaaaacttttaaagtgcataaaataatagaagcttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatctaaagagt |
4947568 |
T |
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| Q |
310 |
aaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctc--ttgctaattggcttc-ttcaccttcgaaataaacttattcttgaactc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4947567 |
aaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcctttgctaattggcttcgttcaccttcgaaataaacttattcttgaactc |
4947468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 34312492 - 34312548
Alignment:
| Q |
245 |
cttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatc |
301 |
Q |
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||||||||| | |||||||||||| ||| |||| ||| | ||||||||||||||||| |
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| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatc |
34312548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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