View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13936_high_4 (Length: 250)
Name: NF13936_high_4
Description: NF13936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13936_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 960496 - 960273
Alignment:
| Q |
17 |
acaattgaccatggaacgtgatcttgtagtcctgtcaacgagcatgtgtgtattgacaaggaagaacctttgtatctaaggtgcactaatttcacaaaa- |
115 |
Q |
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| T |
960496 |
acaattgaccatggaacgtgatcttgtagtcttatcaacgagcatgtgtgtattgacaaggaagaacctttgtatctaaggtgcactaatttcacaaaat |
960397 |
T |
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| Q |
116 |
ttgtcaatggtgttagttaatattgttcaatgagtgcataaaatgggtgcactcataaaagtttcattgattgtttgagtttgttcaaatacaagcatgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
960396 |
ttgtcaatggtgttagttaatattgttcaatgagtgcataaaatgggtgcactcataaaagtttcattgattgtttgag-ttgttcaaatacaagcatga |
960298 |
T |
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| Q |
216 |
tgattactaggatggcccgcctatg |
240 |
Q |
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||||||||||||||||| ||||||| |
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| T |
960297 |
tgattactaggatggccagcctatg |
960273 |
T |
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