View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13936_low_1 (Length: 709)
Name: NF13936_low_1
Description: NF13936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13936_low_1 |
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| [»] scaffold0376 (1 HSPs) |
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| [»] scaffold0279 (1 HSPs) |
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| [»] scaffold0623 (1 HSPs) |
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Alignment Details
Target: scaffold0376 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Complemental strand, 7045 - 6352
Alignment:
| Q |
1 |
tatcaattacaacacattttcttttattttgttatgtttcagattttagaatccaaaaattcttcaatatggtttcaattacaaaattcgaacaaaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7045 |
tatcaattacaacacattttcttttattttgttatgtttcagattttagaatccaaaaattcttcaatatggtttcaattacaaaattcgaacaaaggat |
6946 |
T |
|
| Q |
101 |
atttttggataaaaaagaggatgtgcgagtaagtcatagggtaggaaaagtaacagtcaatatctctagtgtggatccatgcggtctttggagtttgctt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945 |
atttttggataaaaaagaggatgtgcgggtaagtcatagggtaggaaaagtaacagtcaatatctctagtgtggatccatgcggtctttggagtttgctt |
6846 |
T |
|
| Q |
201 |
catgggcatatacttgagcttgatgaaattctctgtttggtccatttcagatgaaattttaggtgcaaataatatttcaattttgttaactacatggaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6845 |
catgggcatatacttgagcttgatgaaattctctgtttggtccatttcagatgaaattttaggtgcaaataatatttcaattttgttaactacatggaat |
6746 |
T |
|
| Q |
301 |
aggtttaatttccccttattcgattttttgaattgnnnnnnnnataagcaaaacttttattaaaaaagagcaactaagtacatatcatacaaaaggaagg |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6745 |
aggtttaatttccccttattcgattttttgaattgttttttttataagcaaaacttttattaaaaaagagcaactaagtacatatcatacaaaaggaagg |
6646 |
T |
|
| Q |
401 |
aaatccaatgccagccaattaaaacaataaaatgtcccctacaaacacctagcagtgccttgacaaagtttgatttctagtgccaaaaaatttcatgtta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6645 |
aaatccaatgccagccaattaaaacaataaaatgtcccctacaaacacctagcagtgccttgacaaagtttgatttttagtgccaaaaaatttcatgtta |
6546 |
T |
|
| Q |
501 |
tagtgctacaagcagccctctaaaactcaccagagcactatcgcactgcaccatcacaaaatctcttttatgtnnnnnnntgtacaaaagctcctcttat |
600 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
6545 |
tagtgctacaagcagccctctaaaactcaccagagcactatcgcactgcaccatcacaaaacctcttttatgtaaaaaaatgtacaaaagctcctcttat |
6446 |
T |
|
| Q |
601 |
atataacctacgaagtacggacacttagttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6445 |
atataacctacgaagtacggacacttagttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
6352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34416304 - 34416363
Alignment:
| Q |
1 |
tatcaattacaacacattttcttttattttgttatgtttcagattttagaatccaaaaat |
60 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
34416304 |
tatcaattacgacacattttcttttattttgttatgtttcgaattttagaatctaaaaat |
34416363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 694
Target Start/End: Complemental strand, 35056957 - 35056908
Alignment:
| Q |
645 |
gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
||||||| ||||||||| || ||||||| ||||||||||||||||||||| |
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| T |
35056957 |
gtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataatt |
35056908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 38867154 - 38867278
Alignment:
| Q |
187 |
tttggagtttgcttcatgggcatatacttgagcttgatgaaa-ttctctgtttggtcc-atttcagatgaaattttaggtgcaaataatatttcaatttt |
284 |
Q |
| |
|
||||| |||||| ||||| | || |||||||||||| ||||| ||| || | ||| || |||||| ||| ||||| ||| |||| |||| |||||||||| |
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| T |
38867154 |
tttggggtttgcctcatgtgtatctacttgagcttgttgaaaattcactttctgggcctatttcaaatgcaatttcaggagcaagtaatctttcaatttt |
38867253 |
T |
|
| Q |
285 |
gttaactacatggaataggtttaat |
309 |
Q |
| |
|
||| | | || |||||||||||||| |
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|
| T |
38867254 |
gttgatttcagggaataggtttaat |
38867278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 567
Target Start/End: Original strand, 8071121 - 8071193
Alignment:
| Q |
495 |
atgttatagtgctacaagcagccctctaaaactcaccagagcactatcgcactgcaccatcacaaaatctctt |
567 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||||||||| ||| | |||||| |||| ||||| |
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|
| T |
8071121 |
atgttatagtgccacaagcagcccactaaaaatcaccagagcactatcacacaacgccatcataaaacctctt |
8071193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 694
Target Start/End: Complemental strand, 9828149 - 9828084
Alignment:
| Q |
629 |
ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||| | |||| || |||||||||||||||| |||| |
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|
| T |
9828149 |
ttagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaatt |
9828084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 694
Target Start/End: Complemental strand, 44482310 - 44482270
Alignment:
| Q |
654 |
gtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||||||| |
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|
| T |
44482310 |
gtgtcgtgtccgacaccgacacgacaccgacacatataatt |
44482270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 20506690 - 20506589
Alignment:
| Q |
4 |
caattacaacacattttcttttattttgttatgtttcagattttagaatccaaaaat-tcttcaatatggtttcaattacaaaattcgaacaaaggatat |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| || ||||||| || ||| || ||| |||||||||||||| |
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|
| T |
20506690 |
caattacaacacatttccttttattttg-tatgtttcgaattttagaatccgaaaatccctccaatatgattcagatttcataatccgaacaaaggatat |
20506592 |
T |
|
| Q |
103 |
ttt |
105 |
Q |
| |
|
||| |
|
|
| T |
20506591 |
ttt |
20506589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 694
Target Start/End: Original strand, 17850 - 17899
Alignment:
| Q |
645 |
gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
17850 |
gtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataatt |
17899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0623 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0623
Description:
Target: scaffold0623; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 694
Target Start/End: Original strand, 5974 - 6015
Alignment:
| Q |
653 |
cgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5974 |
cgtgtcgtgttcgacaccgatacgacaccgacacatataatt |
6015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 686
Target Start/End: Complemental strand, 22652081 - 22652024
Alignment:
| Q |
629 |
ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacac |
686 |
Q |
| |
|
|||||||||| |||| ||||||| | ||||||| || ||||||| ||||||||||||| |
|
|
| T |
22652081 |
ttagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacac |
22652024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 694
Target Start/End: Original strand, 16488568 - 16488609
Alignment:
| Q |
653 |
cgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
16488568 |
cgtgtcgtgtccgacaccgacacgacaccgacacatataatt |
16488609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 694
Target Start/End: Complemental strand, 21814342 - 21814301
Alignment:
| Q |
653 |
cgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
21814342 |
cgtgtcgtgtccgacaccgacacgacaccgacacatataatt |
21814301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 634 - 686
Target Start/End: Complemental strand, 21542130 - 21542078
Alignment:
| Q |
634 |
cgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacac |
686 |
Q |
| |
|
||||| |||| ||||||| ||||||||| || ||||||| ||||||||||||| |
|
|
| T |
21542130 |
cgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacac |
21542078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 694
Target Start/End: Original strand, 30982832 - 30982897
Alignment:
| Q |
629 |
ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatt |
694 |
Q |
| |
|
|||| ||||| |||| ||||||| ||||||||| | ||||||| ||||||||||||| ||||||| |
|
|
| T |
30982832 |
ttaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataatt |
30982897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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