View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13936_low_2 (Length: 511)
Name: NF13936_low_2
Description: NF13936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13936_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 24215815 - 24215553
Alignment:
| Q |
18 |
cttaaaacatttgcggcatgcctgcttgggaagattgttgagaagccgcagaacatttctatgagtaggtgggatagtcagttgcttagtgctgatcagg |
117 |
Q |
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| T |
24215815 |
cttaaaacatttgcagaatgcctgcttgggaagattgttgagaagccgcataacatttctatgagtaggtgggatagtcagttgcttagtgctgatcagg |
24215716 |
T |
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| Q |
118 |
ttaagtatgcaactgttgatgcttttgtttcatttgagatcggtcgtcgtctctattctcgtcagacttgatttcaattattcgtgtgtattgtgttttg |
217 |
Q |
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| T |
24215715 |
ttaagtatgcaactgttgatgcttttgtttcatttgagatcggttgtcgtctctattctcgtcagacttgatttcaattattcgtgtgtattgtgttttg |
24215616 |
T |
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| Q |
218 |
tttcgttttatctttgtgattttttagtgctgttatatatatgagtgaatgtcttaaaattgg |
280 |
Q |
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| T |
24215615 |
tatcgttttatctttgtgattttttagtgctgttatatatatgagtgaatgtcttaaaattgg |
24215553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 340 - 498
Target Start/End: Complemental strand, 24215494 - 24215342
Alignment:
| Q |
340 |
cgagtggtccttcgataattctgtgtttgtgtcgttgttaatattatgtatagattttggattgaagttattaaaacttcagatttgaaggatttttcaa |
439 |
Q |
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| T |
24215494 |
cgagtggtccttcgataattctgtgtttgtgtcatt------attatgtatagattttggattgaagttattaaaacttcagatttgaaggatttttcaa |
24215401 |
T |
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| Q |
440 |
ttgtgcaaattttacttttcttgctttatttctcaacttatttatgtgtttgattctct |
498 |
Q |
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| T |
24215400 |
ttgtgcaaattttacttttcttgctttatttctctacttatttatatgtttgattctct |
24215342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 24224547 - 24224388
Alignment:
| Q |
101 |
gcttagtgctgatcaggttaagtatgcaactgttgatgcttttgtttcatttgagatcggtcgtcgtctctattctcgtcagacttgatttcaattattc |
200 |
Q |
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| T |
24224547 |
gcttaatgttgatcaggttaaatatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctttattcaaagcagaattgatttcaatgattc |
24224448 |
T |
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| Q |
201 |
--gtgtgtattgtgttttgtttcgttttatctttgtgattttttagtgctgttatatata |
258 |
Q |
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| T |
24224447 |
atgtatgttctgtgtttggttttgttttatctttgtgatttttcagtgctgttatttata |
24224388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 24210006 - 24209902
Alignment:
| Q |
73 |
tttctatgagtaggtgggatagtcagttgcttagtgctgatcaggttaagtatgcaactgttgatgcttttgtttcatttgagatcggtcgtcgtctcta |
172 |
Q |
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| T |
24210006 |
tttcgatgagtaggtgggataatccttggctcagtgctattcaggttaaatttgcaactgttgatgcttttgtttcctttgagattggtcgtcgtctcta |
24209907 |
T |
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| Q |
173 |
ttctc |
177 |
Q |
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| T |
24209906 |
ttctc |
24209902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 24229512 - 24229652
Alignment:
| Q |
42 |
cttgggaagattgttgagaagccgcagaacatttctatgagtaggtgggatagtcagttgcttagtgctgatcaggttaagtatgcaactgttgatgctt |
141 |
Q |
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| T |
24229512 |
cttgggaagattgttgagaagccgtcgaggattacgaggagtaggtgggataatccaatgcttgattgggatcaggttaagtatgctactgttgatgctt |
24229611 |
T |
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| Q |
142 |
ttgtttcatttgagatcggtcgtcgtctctattctcgtcag |
182 |
Q |
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| T |
24229612 |
ttctttcctttgagattgctcgtcgtctttattctcatcag |
24229652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 24224307 - 24224258
Alignment:
| Q |
396 |
ttggattgaagttattaaaacttcagatttgaaggatttttcaattgtgc |
445 |
Q |
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| T |
24224307 |
ttggattgaagtcattaaaacttaagatttgatggatttatcatttgtgc |
24224258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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