View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13936_low_3 (Length: 447)
Name: NF13936_low_3
Description: NF13936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13936_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 51690480 - 51690066
Alignment:
| Q |
20 |
gctcgaagccctctaatagaaagcattagcaagcaagagttatgggatgaaagtgcaatgtgaattgtactatattagaatgtgttaggaaaacaaagag |
119 |
Q |
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| T |
51690480 |
gctcgaagccctctaatagaaagcattagcaagcaagagttatgggatgaaagtgcaatgtgaattgtactatattagaatgtgttaggaaaacaaagag |
51690381 |
T |
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| Q |
120 |
acgttgctctaatatctcatccttgtccttttacttcgtttcaagagtaattctagttgttagaattcaaacttttgctacccattgctggtttacaaaa |
219 |
Q |
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| T |
51690380 |
acgttgctctaatatctcatccttgtccttttacttcgtttcaagagtaattcaagttgttagaattcaaacttttgctacccattgctggtttacaaaa |
51690281 |
T |
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| Q |
220 |
ttgatggcattgtgtttcctttttggatgcaatgggtttatccattcaaaatacaagtcatttttgggtttgtat--gaaatacaaagcattaagaatgg |
317 |
Q |
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| T |
51690280 |
ttgatggcattgtgtttcctttttggatgcaatgggtttatccattcaaaatacaagtcatttttgggtttgtatgagaaatacaaagcattaagaatgg |
51690181 |
T |
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| Q |
318 |
acgatttattcatataagcatgtcatggagtaatgcttgaatgatcattatgtgacagttatgttcgttttctttagaagacaaacttgcatcaattatt |
417 |
Q |
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| T |
51690180 |
acgatttattcatataagcatgtcatggagtaatgcttcaatgataattatgtgacagttatgttcgttttctttagaagacaaacttgcatcaattatt |
51690081 |
T |
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| Q |
418 |
tctgaactgatatat |
432 |
Q |
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| T |
51690080 |
tctgaactgatatat |
51690066 |
T |
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