View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13936_low_6 (Length: 220)

Name: NF13936_low_6
Description: NF13936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13936_low_6
NF13936_low_6
[»] chr5 (5 HSPs)
chr5 (1-201)||(10321654-10321850)
chr5 (33-166)||(22587075-22587208)
chr5 (81-166)||(22598923-22599008)
chr5 (70-189)||(35946500-35946619)
chr5 (67-201)||(15225969-15226103)
[»] chr6 (6 HSPs)
chr6 (33-201)||(30045289-30045457)
chr6 (89-157)||(5466999-5467067)
chr6 (81-201)||(35033200-35033322)
chr6 (81-147)||(5467195-5467261)
chr6 (40-125)||(28072194-28072279)
chr6 (105-157)||(1702062-1702114)
[»] chr1 (2 HSPs)
chr1 (33-201)||(32025089-32025257)
chr1 (33-201)||(32025385-32025553)
[»] chr7 (9 HSPs)
chr7 (1-201)||(25194126-25194322)
chr7 (33-201)||(23071893-23072061)
chr7 (33-201)||(3958161-3958328)
chr7 (2-127)||(25194339-25194460)
chr7 (35-150)||(2414417-2414532)
chr7 (33-144)||(23072246-23072357)
chr7 (122-166)||(7406811-7406855)
chr7 (104-148)||(7741613-7741657)
chr7 (81-157)||(15019226-15019302)
[»] scaffold0007 (1 HSPs)
scaffold0007 (33-201)||(261963-262131)
[»] chr4 (6 HSPs)
chr4 (33-201)||(19987784-19987950)
chr4 (32-161)||(18930666-18930795)
chr4 (32-201)||(18936263-18936431)
chr4 (35-177)||(45015485-45015627)
chr4 (33-129)||(8107243-8107339)
chr4 (73-182)||(18977046-18977155)
[»] chr2 (8 HSPs)
chr2 (33-201)||(26533417-26533585)
chr2 (33-201)||(44279144-44279312)
chr2 (34-201)||(27187031-27187188)
chr2 (34-201)||(27836573-27836730)
chr2 (34-201)||(27836845-27837002)
chr2 (33-201)||(21088919-21089086)
chr2 (34-201)||(27187303-27187460)
chr2 (34-201)||(27837117-27837274)
[»] chr8 (13 HSPs)
chr8 (33-164)||(21397117-21397248)
chr8 (33-164)||(21791610-21791741)
chr8 (32-201)||(21403123-21403292)
chr8 (32-201)||(21797616-21797785)
chr8 (37-201)||(34373710-34373875)
chr8 (33-200)||(15937919-15938086)
chr8 (104-202)||(33446111-33446209)
chr8 (64-177)||(9410399-9410512)
chr8 (81-194)||(24195971-24196086)
chr8 (109-199)||(21008307-21008399)
chr8 (81-159)||(22576764-22576844)
chr8 (70-157)||(21396905-21396992)
chr8 (70-157)||(21791398-21791485)
[»] chr3 (3 HSPs)
chr3 (81-202)||(13843772-13843893)
chr3 (104-201)||(2706390-2706487)
chr3 (95-201)||(25315286-25315392)
[»] scaffold1212 (1 HSPs)
scaffold1212 (34-157)||(1954-2077)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10321654 - 10321850
Alignment:
Q  1 catcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactga 100  Q
    ||||||||||||||||||| ||||||  ||  ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||| |    
T  10321654 catcaaacacttttatttatctgatg--tg--ggactcctaacattgccacgccctttaagaacagatgtccacgacaattttcactctatcggcactaa 10321749  T
Q  101 cccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaac 200  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  10321750 cctgatggtagctctatcctttttggcggctacactcacctatcagtaatcggtggagcactttaatccagcctatatgtagccatttctgtggtccaac 10321849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 22587075 - 22587208
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    |||||| |||||||| ||| || |||||||  ||  |||||||||   |||| |||||||| |||||||| |||||| ||||| ||||||||||| |||     
T  22587075 ggactcgtaacattgtcacgccctttaagagtcggcgtccacgacgtctttccctctatcggcactgacctgatggttgccctttcctttttggcagctt 22587174  T
Q  133 cactcacctatcagtattcggtggagcactttaa 166  Q
    |||||||||||||||||||||||| |||| ||||    
T  22587175 cactcacctatcagtattcggtggcgcaccttaa 22587208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 22598923 - 22599008
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaa 166  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| ||| ||||    
T  22598923 tttcactctatcggcactgacccgatggtagccctttcctttttgacgacttcactcatctatcagtattcggtggaacaccttaa 22599008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 35946619 - 35946500
Alignment:
Q  70 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatc 169  Q
    |||||||| | |||||||||| || || | ||||||| |||||||| || ||||||| |||| | ||||||||||||| |||| |||||||||||||  |    
T  35946619 tccacgacgactttcactctaccgacattaacccgatagtagccctttcttttttggaggcttctctcacctatcagtgttcgttggagcactttaatcc 35946520  T
Q  170 agcctatatgtagccatttc 189  Q
    | | |||| |||||||||||    
T  35946519 aacttataagtagccatttc 35946500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 15225969 - 15226103
Alignment:
Q  67 atgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcct-ttttggcggctacactcacctatcagtattcggtggagcacttta 165  Q
    ||||||||||| | ||||||||||||| || ||| |||||||||| ||| |||| |||| |||||| |||| ||  ||||||||||||| || ||| |||    
T  15225969 atgtccacgacgactttcactctatcgacaatgatccgatggtagtcctttcctattttagcggcttcactaactcatcagtattcggt-gaacacctta 15226067  T
Q  166 aatcagcctatatgtagccatttctgtggtccaact 201  Q
    |  || |||||| |||||| |||| |||||||||||    
T  15226068 atccaacctataggtagccttttccgtggtccaact 15226103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 30045457 - 30045289
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| |  ||||||| ||||  ||||||||   ||||||||||||| ||||||||||||||||||||| |||||||||||||||     
T  30045457 ggactcctaacattgccacgctctttaagagccgacttccacgacggctttcactctatcgacactgacccgatggtagccctttcctttttggcggctt 30045358  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  30045357 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 30045289  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 5467067 - 5466999
Alignment:
Q  89 tatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 157  Q
    |||| ||||||||| |||||||||||| |||||||||||| || || ||||||||||||||||| ||||    
T  5467067 tatcatcactgacctgatggtagccctttcctttttggcgacttcattcacctatcagtattcgatgga 5466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 35033322 - 35033200
Alignment:
Q  81 tttcactctatcgt--cactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatat 178  Q
    |||||||||||||   |||||||| ||| ||||| || |||||||||  |||| ||||||| | | ||||||||||||| ||| |||||| ||||||||     
T  35033322 tttcactctatcgagacactgacctgatcgtagctctttcctttttgaaggcttcactcacatgttagtattcggtggaacaccttaaattagcctatag 35033223  T
Q  179 gtagccatttctgtggtccaact 201  Q
     ||| ||||||| ||||||||||    
T  35033222 atagtcatttctatggtccaact 35033200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 5467261 - 5467195
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagt 147  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||   || || ||||||||||||    
T  5467261 tttcactctatcgacactgacccgatggtagccctttcctttttggaaacttcattcacctatcagt 5467195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 28072194 - 28072279
Alignment:
Q  40 taacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttg 125  Q
    |||||||  |||||| || |||| ||||  ||||||||   ||||||||||||  ||||||||||||||||||||| |||||||||    
T  28072194 taacattatcacacccttcaagagccgacatccacgacggctttcactctatcagcactgacccgatggtagccctttcctttttg 28072279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 1702062 - 1702114
Alignment:
Q  105 atggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 157  Q
    ||||||||||| | || ||| |||||| ||||||||||| |||||||||||||    
T  1702062 atggtagcccttttctattttgcggcttcactcacctattagtattcggtgga 1702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 32025257 - 32025089
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| |  ||||||| |||| || |||| |   ||||||||||||| ||||||||||||||||||||| |||||||||||||||     
T  32025257 ggactcctaacattgccacgctctttaagagccgacgttcacggcggctttcactctatcgacactgacccgatggtagccctttcctttttggcggctt 32025158  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  32025157 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 32025089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 32025553 - 32025385
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| |  ||||||| |||| || |||| |   ||||||||||||| ||||||||||||||||||||| |||||||||||||||     
T  32025553 ggactcctaacattgccacgctctttaagagccgacgttcacggcggctttcactctatcgacactgacccgatggtagccctttcctttttggcggctt 32025454  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  32025453 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 32025385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 25194322 - 25194126
Alignment:
Q  1 catcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactga 100  Q
    ||||||||||||||||||| | |||  |||  ||||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||| |    
T  25194322 catcaaacacttttatttatccgat--atg--ggactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcgacactaa 25194227  T
Q  101 cccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaac 200  Q
    | | ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||||  ||||| ||||||| |||||||    
T  25194226 ctcaatggtagccctttcctttttggaggcttcactcacctatcagtattcggtggagcactttaatccagcctatagttagccctttctgtagtccaac 25194127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 23072061 - 23071893
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| || ||||||| || | |||||||||   ||||||||||||| | |||||| |||||||||| | ||| |||||||||||     
T  23072061 ggactcctaacattgccacgccctttaagagccaacgtccacgacggctttcactctatcggctctgacctgatggtagccatttcccttttggcggctt 23071962  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    |||||||||||||||| |||||||| ||| ||||  || |||||| || ||  ||||||||||||||||    
T  23071961 cactcacctatcagtactcggtggaacaccttaatccaacctataggttgctctttctgtggtccaact 23071893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 3958161 - 3958328
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||| ||| || ||||||| ||| |||||||| |   ||||||||||||| |||| ||  |||||||||||| |||||||| ||||||     
T  3958161 ggactcctaacattgacacgccctttaagagccggtgtccacggcggctttcactctatcggcactaacatgatggtagccctttccttttt-gcggctt 3958259  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    || |||| ||||||||||||||| | ||| ||||  || |||||| |||||| |||| |||||||||||    
T  3958260 cattcacatatcagtattcggtgaaacaccttaatccaacctataagtagccctttccgtggtccaact 3958328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 25194460 - 25194339
Alignment:
Q  2 atcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgac 101  Q
    ||||||||||||||||||||| ||  |||  ||||||||||||||| ||| || |||||||  |||||||||||||  ||||||||||||||  ||||||    
T  25194460 atcaaacacttttatttacctaat--atg--ggactcctaacattgtcacgccctttaagagtcgatgtccacgacggttttcactctatcgatactgac 25194365  T
Q  102 ccgatggtagccctatcctttttggc 127  Q
    |||||||||||||| | |||||||||    
T  25194364 ccgatggtagcccttttctttttggc 25194339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 2414417 - 2414532
Alignment:
Q  35 actcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctaca 134  Q
    |||||| |||||| |||||| |||||||| | | ||||| ||| | ||||| ||||||| ||| |||  ||||||||||||||| ||||  |||||| ||    
T  2414417 actcctgacattgtcacaccctttaagaatcaacgtccatgacgactttcaatctatcgacaccgacttgatggtagccctatctttttctgcggcttca 2414516  T
Q  135 ctcacctatcagtatt 150  Q
    | ||||||||||||||    
T  2414517 cccacctatcagtatt 2414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 23072357 - 23072246
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||| | | || ||||||   ||||||||| ||| |  |||||||||||| |||||||| |||||||||| | ||| |||||  || |     
T  23072357 ggactcctaacattgtcgcgccctttaagtgtcgatgtccatgacgacgttcactctatcgacactgacctgatggtagccatttcccttttgttggatt 23072258  T
Q  133 cactcacctatc 144  Q
    ||||||||||||    
T  23072257 cactcacctatc 23072246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 7406811 - 7406855
Alignment:
Q  122 tttggcggctacactcacctatcagtattcggtggagcactttaa 166  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||    
T  7406811 tttggcggtttcactcacctatcagtattcggtggaacaccttaa 7406855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 7741613 - 7741657
Alignment:
Q  104 gatggtagccctatcctttttggcggctacactcacctatcagta 148  Q
    |||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  7741613 gatggtagccctttccattttgacggcttcactcacctatcagta 7741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 15019302 - 15019226
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 157  Q
    |||||||| |||| ||||||   |||||||||| | ||||||||| | ||| | |||||||||||||||||| ||||    
T  15019302 tttcactcgatcgacactgatatgatggtagccatttcctttttgacagctccgctcacctatcagtattcgatgga 15019226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 262131 - 261963
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| |  ||||||| |||| || |||| |   ||||||||||||| |||||||| |||||||||||| |||||||||||||||     
T  262131 ggactcctaacattgccacgctctttaagagccgacgttcacggcggctttcactctatcgacactgacctgatggtagccctttcctttttggcggctt 262032  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  262031 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 261963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 19987950 - 19987784
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| || ||||||| |||| |||||||||   |||||||  |||| |||||||| |||||||||||| |||||||||| ||||     
T  19987950 ggactcctaacattgccacgccctttaagagccgacgtccacgacggctttcact--atcggcactgacctgatggtagccctttcctttttggaggctt 19987853  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  19987852 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 19987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 18930795 - 18930666
Alignment:
Q  32 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 131  Q
    ||||||||||| || | |||||| ||||||| |||| ||||||||| | ||| ||||||||| ||||||||  ||||||||||| |||||||||||||||    
T  18930795 aggactcctaaaatagtcacaccttttaagagccgacgtccacgacgacttttactctatcggcactgacctaatggtagccctttcctttttggcggct 18930696  T
Q  132 acactcacctatcagtattcggtggagcac 161  Q
     |||||||||||||||||||||||||||||    
T  18930695 tcactcacctatcagtattcggtggagcac 18930666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 18936431 - 18936263
Alignment:
Q  32 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 131  Q
    |||||||||||||||||||| || |||||||  ||  ||||||||| | ||||||||||||   |||||||| |||||||| || |||||||||||||||    
T  18936431 aggactcctaacattgccacgccctttaagagtcggcgtccacgacgactttcactctatcaa-actgacccaatggtagctctttcctttttggcggct 18936333  T
Q  132 acactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
     |||||||||||||||||||  |||||||| ||||  ||   ||||||||||| |||| ||| |||||||    
T  18936332 tcactcacctatcagtattcaatggagcaccttaatccataatatatgtagccctttccgtgatccaact 18936263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 45015485 - 45015627
Alignment:
Q  35 actcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctaca 134  Q
    |||||||| |||| |||||| |||||||||  | || |||| || |||||||||||| |  | |||||||||||||||| |  |||||||||||||| ||    
T  45015485 actcctaatattgtcacaccctttaagaacttacgttcacggcagttttcactctattgatattgacccgatggtagccattacctttttggcggcttca 45015584  T
Q  135 ctcacctatcagtattcggtggagcactttaaatcagcctata 177  Q
    |||||||||| |||||  ||||||||| ||||  |||||||||    
T  45015585 ctcacctatcggtatttagtggagcaccttaatccagcctata 45015627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 8107243 - 8107339
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcgg 129  Q
    ||||| |||||||||||||  | ||||||| |||| |||||||||   ||||||||| ||| || |||||||||| |||| || |||||||||||||    
T  8107243 ggacttctaacattgccacgtcctttaagagccgacgtccacgacggctttcactctgtcggcattgacccgatgatagctctttcctttttggcgg 8107339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 18977155 - 18977046
Alignment:
Q  73 acgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagc 172  Q
    |||||||  |||||||||||| ||||  ||||||| || || |  ||||||| |||||| ||||||| ||||||||||||||  ||||| ||||  || |    
T  18977155 acgacaacattcactctatcgacactagcccgatgataacctttcccttttttgcggcttcactcacttatcagtattcggtaaagcaccttaatccaac 18977056  T
Q  173 ctatatgtag 182  Q
    ||||||||||    
T  18977055 ctatatgtag 18977046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 26533585 - 26533417
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||| ||||||||||| || ||||||| | || ||||||| |   ||||||||||||| ||||||||| ||||||||||| |||||||||| ||||     
T  26533585 ggactccaaacattgccacgccctttaagagctgacgtccacggcggctttcactctatcgacactgacccaatggtagccctttcctttttggtggctt 26533486  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||| ||||  ||||||||||    
T  26533485 cactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccatggtccaact 26533417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 44279312 - 44279144
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||||||||||||||||| || |||| || | || ||| ||||| | ||||||||||||||||||||||||||| ||||||| ||||||||| |||||     
T  44279312 ggactcctaacattgccacgccctttaggagcagacgtctacgacgactttcactctatcgtcactgacccgatgatagccctttcctttttgacggctt 44279213  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    |||||||||| |||||||||||||| ||| |||| ||| | |||| ||| || |||| |||||||||||    
T  44279212 cactcacctaccagtattcggtggaacaccttaattcaacatataggtaaccctttccgtggtccaact 44279144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 27187031 - 27187188
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    |||||||||||||||||| || ||||||| |||| |||||||   | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27187031 gactcctaacattgccacgccctttaagagccgacgtccacggtgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27187120  T
Q  134 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  27187121 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 27187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 27836573 - 27836730
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    |||||||||||||||||| || ||||||| |||| |||||||   | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27836573 gactcctaacattgccacgccctttaagagccgacgtccacggtgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27836662  T
Q  134 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  27836663 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 27836730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 27836845 - 27837002
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27836845 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27836934  T
Q  134 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| |||| |||||||||||    
T  27836935 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaact 27837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 21089086 - 21088919
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    |||||||||||||| | || |  ||||||| |||| |||||||||   ||||||||||||| |||| || |||   ||||||| |||||||||||||||     
T  21089086 ggactcctaacatttcaacgctctttaagagccgacgtccacgacggctttcactctatcggcact-actcgacaatagccctttcctttttggcggctt 21088988  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||||||||| | ||| ||||   || ||||| |||||| |||| ||| |||||||    
T  21088987 cactcacctatcagtattcggtgaaacaccttaatctagactataggtagccctttccgtgctccaact 21088919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 27187303 - 27187460
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27187303 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27187392  T
Q  134 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    | |||||||||||||||||||||| ||| ||||  || |||||| |||||| |||| || ||||||||    
T  27187393 aatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaact 27187460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 27837117 - 27837274
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27837117 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27837206  T
Q  134 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    | |||||||||||||||||||||| ||| ||||  || |||||| |||||| |||| || ||||||||    
T  27837207 aatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaact 27837274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 21397248 - 21397117
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    |||||||||||||||||||||| | ||| | || |  |||||||| | ||||||||||||| ||||||||||||||||||||| |||| |||| |||||     
T  21397248 ggactcctaacattgccacaccctataaaagccaacatccacgacgactttcactctatcggcactgacccgatggtagccctttcctctttgacggctg 21397149  T
Q  133 cactcacctatcagtattcggtggagcacttt 164  Q
    |||||||||||||||||| |||||| ||||||    
T  21397148 cactcacctatcagtatttggtggaacacttt 21397117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 21791741 - 21791610
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    |||||||||||||||||||||| | ||| | || |  |||||||| | ||||||||||||| ||||||||||||||||||||| |||| |||| |||||     
T  21791741 ggactcctaacattgccacaccctataaaagccaacatccacgacgactttcactctatcggcactgacccgatggtagccctttcctctttgacggctg 21791642  T
Q  133 cactcacctatcagtattcggtggagcacttt 164  Q
    |||||||||||||||||| |||||| ||||||    
T  21791641 cactcacctatcagtatttggtggaacacttt 21791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 21403292 - 21403123
Alignment:
Q  32 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 131  Q
    |||||||||||||||| ||| || ||||||| ||||  || ||| ||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| |    
T  21403292 aggactcctaacattgtcacgccctttaagagccgacatctacggcaactttcactctattggcactgagccgatggtagccctctcctttttggcggtt 21403193  T
Q  132 acactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    |||| |||| ||||||||| |||||| ||| ||||  ||||||||| |||||  ||||  ||||||||||    
T  21403192 acacccaccaatcagtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaact 21403123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 21797785 - 21797616
Alignment:
Q  32 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 131  Q
    |||||||||||||||| ||| || ||||||| ||||  || ||| ||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| |    
T  21797785 aggactcctaacattgtcacgccctttaagagccgacatctacggcaactttcactctattggcactgagccgatggtagccctctcctttttggcggtt 21797686  T
Q  132 acactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    |||| |||| ||||||||| |||||| ||| ||||  ||||||||| |||||  ||||  ||||||||||    
T  21797685 acacccaccaatcagtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaact 21797616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 34373710 - 34373875
Alignment:
Q  37 tcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcc-tttttggcggctacac 135  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||| || | || |||||| |||||| ||| ||||||| |||| |||    
T  34373710 tcctaacattgccacaccctttaagagccgacgtccacgacaactttcactctatcggcaataactcgatggcagccctttccttttttggtggcttcac 34373809  T
Q  136 tcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    ||||||||||||||||| |||| ||| ||||  ||||||| | |||||  |||  |||||||||||    
T  34373810 tcacctatcagtattcgatggaacaccttaatccagcctacaggtagcactttacgtggtccaact 34373875  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 15937919 - 15938086
Alignment:
Q  33 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 132  Q
    ||||| ||||||||||||| || ||||||| ||||||| ||||     ||||| ||||||| |||| |||||||||||||||| |   | |||| ||||     
T  15937919 ggacttctaacattgccacgccctttaagagccgatgtacacggaggctttcattctatcggcactaacccgatggtagccctttttctattggtggctt 15938018  T
Q  133 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaac 200  Q
    ||||||||||||||||||| ||||||||| ||||  ||| ||||| |||||| ||||  |||||||||    
T  15938019 cactcacctatcagtattcagtggagcaccttaatccagtctataggtagccctttccttggtccaac 15938086  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 33446209 - 33446111
Alignment:
Q  104 gatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaactt 202  Q
    |||||||||||| | ||||||||||||| || ||||||||||||||| ||| |||||| ||||  |||||||||||||||| |||  ||||||||||||    
T  33446209 gatggtagcccttttctttttggcggcttcattcacctatcagtatttggttgagcaccttaatccagcctatatgtagccctttacgtggtccaactt 33446111  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 9410512 - 9410399
Alignment:
Q  64 ccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactt 163  Q
    |||| ||||||||| | || |||||||||| |||||| |||||||||||  | ||||||||||||||| ||||||| || ||||||| |||||| ||| |    
T  9410512 ccgacgtccacgacgacttgcactctatcggcactgatccgatggtagcattttcctttttggcggcttcactcacataccagtatttggtggaacacct 9410413  T
Q  164 taaatcagcctata 177  Q
    ||| ||||||||||    
T  9410412 taattcagcctata 9410399  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 24195971 - 24196086
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcac--ctatcagtattcggtggagcactttaaatcagcctatat 178  Q
    ||||||| ||||| || ||| |||||||||||||| |||||||||| || | ||||| |  ||||||||||||| | |||||| |||| ||||||||||     
T  24195971 tttcactttatcgacattgatccgatggtagccctttcctttttggtggtttcactctctcctatcagtattcgatagagcaccttaattcagcctatag 24196070  T
Q  179 gtagccatttctgtgg 194  Q
    |||||| |||| ||||    
T  24196071 gtagccctttccgtgg 24196086  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 21008307 - 21008399
Alignment:
Q  109 tagccctatcctttttggcggctacactcacctatcag--tattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaa 199  Q
    |||||||  |||||||||||||| ||||||||||||||  |||| |||||| ||| ||||  ||||||||| |||||| |||| |||||||||    
T  21008307 tagccctcgcctttttggcggcttcactcacctatcagtatatttggtggaacaccttaatccagcctataggtagccctttccgtggtccaa 21008399  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 22576764 - 22576844
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcct--ttttggcggctacactcacctatcagtattcggtggagc 159  Q
    ||||||||||||| |||| || ||||| ||||||| |  |  |||||||| || |||||||||||||||||||||||||||    
T  22576764 tttcactctatcgccactaactcgatgctagcccttttttgtttttggcgacttcactcacctatcagtattcggtggagc 22576844  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 21396905 - 21396992
Alignment:
Q  70 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 157  Q
    ||||| |||| |||||||||||   ||||||||| ||  |||||   |||||||||||| || ||||||||||| |||||||||||||    
T  21396905 tccacaacaactttcactctattaacactgacccaataatagccaattcctttttggcgccttcactcacctataagtattcggtgga 21396992  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 21791398 - 21791485
Alignment:
Q  70 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 157  Q
    ||||| |||| |||||||||||   ||||||||| ||  |||||   |||||||||||| || ||||||||||| |||||||||||||    
T  21791398 tccacaacaactttcactctattaacactgacccaataatagccaattcctttttggcgccttcactcacctataagtattcggtgga 21791485  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 13843772 - 13843893
Alignment:
Q  81 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgt 180  Q
    ||||||||||||  ||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||| |||| ||| ||||  ||| ||||| ||    
T  13843772 tttcactctatctgcactgacccgatggtagccctttcttttttgacggcttcactcacctatcagtattcgatggaacaccttaatccagtctataggt 13843871  T
Q  181 agccatttctgtggtccaactt 202  Q
    |||| |||| ||||||||||||    
T  13843872 agccctttcggtggtccaactt 13843893  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 2706390 - 2706487
Alignment:
Q  104 gatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtggtccaact 201  Q
    |||||||||||| || ||||||||||||  ||||||||||| |||||||||||| ||  ||||  ||||||||| |||||  ||| ||||||||||||    
T  2706390 gatggtagccctttcttttttggcggctttactcacctatcggtattcggtggaacatcttaatccagcctataagtagctctttttgtggtccaact 2706487  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 25315392 - 25315286
Alignment:
Q  95 cactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtgg 194  Q
    |||||||  ||||| | |||| |||| ||| |||||| ||||||||||||| ||||| |||||||| || ||  ||| ||||| |||||| ||||||||     
T  25315392 cactgacttgatggcaaccctttcctattttgcggcttcactcacctatcaatattcagtggagcatttcaatccagtctataggtagccctttctgtga 25315293  T
Q  195 tccaact 201  Q
    |||||||    
T  25315292 tccaact 25315286  T

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Target: scaffold1212 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 2077 - 1954
Alignment:
Q  34 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 133  Q
    ||||||||| ||||||||| | ||||||| |||| ||||||| | | ||| |||||| || |||||||||||||||||| || ||||||||||||||| |    
T  2077 gactcctaatattgccacatcctttaagagccgacgtccacggcgacttttactctaccgacactgacccgatggtagctctttcctttttggcggcttc 1978  T
Q  134 actcacctatcagtattcggtgga 157  Q
    |||||||||| |||||| ||||||    
T  1977 actcacctattagtattgggtgga 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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