View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13937_high_2 (Length: 465)
Name: NF13937_high_2
Description: NF13937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13937_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 158539 - 158086
Alignment:
| Q |
1 |
ttgaccaccaaacatattttcttgaggatatcctaatccaagcacacacccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158539 |
ttgaccaccaaacatattttcttgaggatatcctaatccaagcacacacccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttatt |
158440 |
T |
|
| Q |
101 |
ccacaatgaaaaaaccccactgttatgtcatgctaaaggtagaaacacccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158439 |
ccacaatgaaaaaaccccactgttgtgtcatgctaaaggtagaaacacccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttatt |
158340 |
T |
|
| Q |
201 |
aactcaannnnnnnnnnnnggaaagccnnnnnnntccactttattattactcaccaactccttgattttattccttttatttcttcctcccaaccttcta |
300 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158339 |
aactcaatttttattttttggaaagccaaaaaaatccactttattattactcaccaactccttgattttattccttttatttcttcctcccaaccttcta |
158240 |
T |
|
| Q |
301 |
acattgaaggttgtaataatcattgattgcaatttagtctctcccttgctaccttcaatcctacatcaccttcttccaactctaccaattttgtcgtagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158239 |
acattgaaggttgtaataatcattgattgcaatttagtctctcccttgctaccttcaatcctacatcaccttcttccaactctaccaattttgtcgtagt |
158140 |
T |
|
| Q |
401 |
acttacatcttccatagtaaaagtaaatcccaccttcttttgaatatcttagat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158139 |
acttacatcttccatagtaaaagtaaatcccaccttcttttgaatatcttagat |
158086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University