View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13937_high_3 (Length: 394)
Name: NF13937_high_3
Description: NF13937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13937_high_3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 14740948 - 14741324
Alignment:
| Q |
18 |
gaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgcttatcatatctttcatgtcaccagcattat |
117 |
Q |
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| T |
14740948 |
gaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgcttatcatatctttcatgtcaccagcattat |
14741047 |
T |
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| Q |
118 |
gttttttgatcttaggtaaatctggtaatgagattgtatcagccatcagctatgcctgccagccnnnnnnnnnnnnnnnnttaatgagacaaatcatgat |
217 |
Q |
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| T |
14741048 |
gttttttgatcttaggtaaatctggtaatgagattgtatcagccatcagctatgcctgccagccaaaaataaaaacaaaattaatgagacaaatcatgat |
14741147 |
T |
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| Q |
218 |
tggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaat |
317 |
Q |
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| T |
14741148 |
tggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaat |
14741247 |
T |
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| Q |
318 |
atggatttctagaatatatgttgttacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctact |
394 |
Q |
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| T |
14741248 |
atggatttctagaatatatgttgttacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctact |
14741324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 17585248 - 17584873
Alignment:
| Q |
18 |
gaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgcttatcatatctttcatgtcaccagcattat |
117 |
Q |
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| T |
17585248 |
gaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgcttatcatatctttcatgtcaccagcattat |
17585149 |
T |
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| Q |
118 |
gttttttgatcttaggtaaatctggtaatgagattgtatcagccatcagctatgcctgccagccnnnnnnnnnnnnnnnnttaatgagacaaatcatgat |
217 |
Q |
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| T |
17585148 |
gttttttgatcttaggtaaatctggtgatgagattgtatcagccatcagctatgcctgccagccaaaaataaaaacaaaattaatgagacaaatcatgat |
17585049 |
T |
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| Q |
218 |
tggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaat |
317 |
Q |
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| T |
17585048 |
tggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaat |
17584949 |
T |
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| Q |
318 |
atggatttctagaatatatgttgttacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctact |
394 |
Q |
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| T |
17584948 |
atggatttctagaatatatgttg-tacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctact |
17584873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 31001255 - 31001202
Alignment:
| Q |
56 |
aatataatgaagaatggcatcaggcatgttgcttatcatatctttcatgtcacc |
109 |
Q |
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| T |
31001255 |
aatataatgaagaatggcgtcacgcaagtcgcttattatatctttcatgtcacc |
31001202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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