View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13937_high_4 (Length: 254)
Name: NF13937_high_4
Description: NF13937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13937_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 56060102 - 56059885
Alignment:
| Q |
13 |
attatactgcaatgcaaagtcaaacctaagagagctaaatgtatatgaggaatggaatgtggcttatataaaaagcagaagaaggtatcgactcattata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56060102 |
attatactgcaatgcaaagtcaaacctaagagagctaaatgtatatgaggaatggaatgtggcttatataaaaagcagaagaaggtatcgactcatta-- |
56060005 |
T |
|
| Q |
113 |
tatataagtatgttgttttgagttgaggaggagttcaattcaaattaatagtatatctcttacgtaagttaagccaaattaagttgataaacaaactcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
56060004 |
--tataagtatgttgttttgagttgaggaggagttcaattcaaattaatagtatatctcttacgtaagttaagcca----aagttgataaacaaactcaa |
56059911 |
T |
|
| Q |
213 |
agacgatgagcaacttgagtggcaac |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
56059910 |
agacgatgagcaacttgagtggcaac |
56059885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University