View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13937_low_1 (Length: 540)
Name: NF13937_low_1
Description: NF13937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13937_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Original strand, 218462 - 218969
Alignment:
| Q |
12 |
aatagtacaaagaatttagattaaaacctacaatcacatcaaaacagaaagagaatgagtaccattgataactaacagaccaaagtaataataatagaca |
111 |
Q |
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| T |
218462 |
aatactacaaagaatttagattaaaacctacaatcacatcaaaacagaaagagaatgagtactattgataactaacagaccaaagtaataataatagaca |
218561 |
T |
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| Q |
112 |
atagtgtagcaccaacccaatcaacaatgagtttttgcttaacaaaaatgagctaaaaaacaagaaattgaaacgaagaaaacaaccttttaacttgatc |
211 |
Q |
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| T |
218562 |
atagtgtagcaccaacccaatcaacagtgagtttttgcttaacaaaaatgagctaaaaaacaagaaattgaaacgaagaaaacaaccttttaacttgatc |
218661 |
T |
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| Q |
212 |
aaaggcctaaaagccaaaaataaagcaacttccattacaagacattaatgcgatctaatgatgaaattaccccaaacgttagtgatggttagtgtgatct |
311 |
Q |
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| T |
218662 |
aaaggcctaaaagccaaaaataaagcaacttccattacaagacattaatgcgatctaat-------------------ttagtgatggttagtgtgatct |
218742 |
T |
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| Q |
312 |
aatggtgaagttatcacatacatacctattgggcttaactcatccttacaaatccgatttgtaaggcgaaggttgtgaccctttataaactattatcaag |
411 |
Q |
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| T |
218743 |
aatggtgaagttatcacatacatacctattgggcttaactcatacttacaaatccgatttgtaaggcgaaggttgtgaccctttataaactcttatcaag |
218842 |
T |
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| Q |
412 |
agtcgagagtcctatcttttttctatgtg----------------------actctgtcacacccagcactattgggattgttgcgtgtacataaataga |
489 |
Q |
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| T |
218843 |
agtcgagagtcctatcttttttctatgtgggagttgggtttttcccattacactctgtcacacagaccactattgggattgttgcgtgtacataaataga |
218942 |
T |
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| Q |
490 |
gggtggcccgatagataggatttgata |
516 |
Q |
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| T |
218943 |
gggtggcccgatagataggctttgata |
218969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 4029645 - 4029719
Alignment:
| Q |
342 |
gggcttaactcatccttacaaatccgatttgtaaggcgaaggttgtgacc-ctttataaactattatcaagagtc |
415 |
Q |
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| T |
4029645 |
gggcctaactcatccttacaaaaccggtttgtaaggtgaagattgtatcctctttataaactcttctcaagagtc |
4029719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 34250349 - 34250398
Alignment:
| Q |
338 |
tattgggcttaactcatccttacaaatccgatttgtaaggcgaaggttgt |
387 |
Q |
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| T |
34250349 |
tattgggcctaactcatccttacaaaaccgacttgtaaggtgagggttgt |
34250398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 44817686 - 44817630
Alignment:
| Q |
346 |
ttaactcatccttacaaatccgatttgtaaggcgaaggttgtgaccctttataaact |
402 |
Q |
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| T |
44817686 |
ttaactcatccttgcaaaaccgatttgtaaggtgaagagtgttactctttataaact |
44817630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 44056682 - 44056621
Alignment:
| Q |
447 |
tcacacccagcactattgggattgttgcgtgtacataaatagagggtggcccgatagatagg |
508 |
Q |
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| T |
44056682 |
tcacgcccaacactattgggattgatgcgtggatataaatggtgggtggcctgatagatagg |
44056621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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