View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13937_low_2 (Length: 469)
Name: NF13937_low_2
Description: NF13937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13937_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 11321729 - 11321296
Alignment:
| Q |
18 |
aaggagatgaaggctgcggttaagagagtctttcccgaagaaatggccaaactc-gccctctcagcggctatcgtacctgtaaccagttttggtattgac |
116 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
11321729 |
aaggagatgaatgctgccgttaagggagtctttcccgaagaaatggctaaactcagccctctcca----------acctgtaaccagttttggtatcgat |
11321640 |
T |
|
| Q |
117 |
caattgtgtgatacaattgataaaaccgtgatatagatgttggattctttcttctctataatgtgcacagaaagttcagttggaattaatatgttttgtt |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11321639 |
caattgtgcaatacaattgataaaaccgtgatatagatgttggattctttcttctctataatgtgcacagaaagttcagttggaattaatatgttt-gtt |
11321541 |
T |
|
| Q |
217 |
gaaaagtattatgttcatagttgttaaaatcccgattagaatcctaaaattctac--------gattttgttctgccttaccgatttgaatgcttagtag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11321540 |
gaaaagtattatgttcatagttgttaaaatcccgaattgaatcctaaaattctaccattttgcgattttgctctgccttaccgatttaaatgcttagtag |
11321441 |
T |
|
| Q |
309 |
aatcctaaactacaaaaaatctgcttgaaatcgtatatgtttaagagatttcacgattttgctctgccttataattgaagcgttcgtgatgcgatgtagg |
408 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11321440 |
aatcctaaactacacaaaatctgctcaaaatcgtatatgtttaagagatttcacgattttgctctgccttataattgaagcgttcgtgatgtgatgtagg |
11321341 |
T |
|
| Q |
409 |
cttgtagcatctatgttttgagtattttgcagacttggttgtttt |
453 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11321340 |
cttgtagcatctaggttttgagtattttgtagacttggttgtttt |
11321296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 435
Target Start/End: Complemental strand, 9720514 - 9720315
Alignment:
| Q |
236 |
gttgttaaaatcccgattagaatcctaaaattctacgattttgttctgccttaccgatttgaatgcttagtagaatcctaaactacaaaaaatctgcttg |
335 |
Q |
| |
|
||||||| ||||||||| ||||| || |||| |||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||| | ||| |
|
|
| T |
9720514 |
gttgttacaatcccgatcagaatactgaaatcctacgatttttctctgccttaccgatctgaaaatttagtagaatcctaaactatgaaaaatccgtttg |
9720415 |
T |
|
| Q |
336 |
aaatcgtatatgtttaagagatttcacgattttgctctgccttataattgaagcgttcgtgatgcgatgtaggcttgtagcatctatgttttgagtattt |
435 |
Q |
| |
|
|| || | ||||||| | |||| ||||| |||||| ||||||||| ||| ||||| ||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
9720414 |
aagtcatctatgtttgatctattttgtgatttcactctgctttataattggcatgtttatgatgtgatgtagtcttgtagcatctaggttctgagtattt |
9720315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 27676977 - 27676919
Alignment:
| Q |
378 |
tataattgaagcgttcgtgatgcgatgtaggcttgtagcatctatgttttgagtatttt |
436 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
27676977 |
tataattggcgcgttcgtgatgtgatgtaggcttgtaggatctagattttgagtatttt |
27676919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 7604173 - 7604254
Alignment:
| Q |
370 |
ctctgccttataattgaagcgttcgtgatgcgatgtaggcttgtagcatctatgttttgagtattttgcagacttggttgtt |
451 |
Q |
| |
|
||||| ||||||||||| | |||| ||| | ||||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7604173 |
ctctgtcttataattgacgtgttcatgaagtgatgtagtcttgtagcatctaaattttgagtattttgtgcacttggttgtt |
7604254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 27677040 - 27676992
Alignment:
| Q |
272 |
gattttgttctgccttaccgatttgaatgcttagtagaatcctaaacta |
320 |
Q |
| |
|
||||||| |||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
27677040 |
gattttgctctgccttaccgatcagaatcctgagtagaatcctaaacta |
27676992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 9323685 - 9323784
Alignment:
| Q |
336 |
aaatcgtatatgtttaagagatttcacgattttgctctgccttataattgaagcgttcgtgatgcgatgtaggcttgtagcatctatgttttgagtattt |
435 |
Q |
| |
|
||||||| ||| |||||| ||| | |||||||||||||||||||||||| || || |||||| ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
9323685 |
aaatcgtttatatttaagtgatattgcgattttgctctgccttataattggcgcatttgtgatgtgatgttggcttgtaacatctatattttgagtattt |
9323784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 35399081 - 35399174
Alignment:
| Q |
344 |
tatgtttaagagatttcacgattttgctctgccttataattgaagcgttcgtgatgcgatgtaggcttgtagcatctatgttttgagtattttg |
437 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||||| ||||||| ||| | | |||| |||||||||||| ||||||||||||||| |
|
|
| T |
35399081 |
tatgtttaagtgattttgcaattttgctctgccttataattgccacgttcgtaatgtgttttaggtttgtagcatctaggttttgagtattttg |
35399174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 23907154 - 23907114
Alignment:
| Q |
394 |
gtgatgcgatgtaggcttgtagcatctatgttttgagtatt |
434 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
23907154 |
gtgatgcgatgtatgcttgtagcatctaggttttgaatatt |
23907114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University