View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_11 (Length: 474)
Name: NF13938_high_11
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 51211478 - 51211019
Alignment:
| Q |
1 |
agcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgtgg-acaggtttcttatgcatggggctaataatgccaaaaggataaaattg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211478 |
agcactcctctttaagcaaataaaatcaaagtttaatttaaaagatgtgtgggacaggtttcttatgcatggggctaataatgccaaaaggataaaattg |
51211379 |
T |
|
| Q |
100 |
cagattgcccgctcaacaatttaatagttttcaattcattgataatgtgataacttggaatatattgatcgtacaacatagatgtaagcatgtcagcata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211378 |
cagattgcccgctcaacaatttaatagttttcaattcattgataatgtgataacttggaatatattgatcgtacaacatagatgtaagcatgtcagcata |
51211279 |
T |
|
| Q |
200 |
ctcgagggtctcacattagatagagatatggcatagatactggctgtgtgagggaaaactctcagcccatgaccatgcttttggggctgagttagactga |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51211278 |
ctcgagggtctcacattagatagagatatgacatagatactggctgtgtgagggaaaactctcagcccatgaccatgcttttggggttgagttagactga |
51211179 |
T |
|
| Q |
300 |
aactcaagttttaatatggtatcagagcctatcatagaccagttgtgccacccacggatgttcaatcctaagaacatcatgcaccagatgtccaatcata |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211178 |
aactcaagttttaatatggtatcagagcctatcatagacccgttgtgccacccacggatgttcaatcctaagaacatcatgcaccagatgtccaatcata |
51211079 |
T |
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| Q |
400 |
ggcatcagggggtggcacactggaaatgatattgaacagtggttatattgtggtggtggt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211078 |
ggcatcagggggtggcacactggaaatgatattgaacagtggttatattgtggtggtggt |
51211019 |
T |
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