View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_12 (Length: 470)
Name: NF13938_high_12
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 35696584 - 35697038
Alignment:
| Q |
1 |
ttggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggtcgtcc |
100 |
Q |
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| T |
35696584 |
ttggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggtcgtcc |
35696683 |
T |
|
| Q |
101 |
acaagggattcttaacattggtgttaatgttgtcgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgat |
200 |
Q |
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| T |
35696684 |
acaagggattcttaacattggtgttaatgttgttgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgat |
35696783 |
T |
|
| Q |
201 |
ataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntg |
300 |
Q |
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| T |
35696784 |
ataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatg |
35696883 |
T |
|
| Q |
301 |
attcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgt |
400 |
Q |
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| T |
35696884 |
attcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgt |
35696983 |
T |
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| Q |
401 |
gatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtg |
455 |
Q |
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| T |
35696984 |
gatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtg |
35697038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 47725359 - 47725280
Alignment:
| Q |
93 |
ggtcgtccacaagggattcttaacattggtgttaatgttg-tcgatgctacgatgagaagcatgccgatgtattcggagct |
172 |
Q |
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|||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
47725359 |
ggtcgtccacaagggattcttaacatcggtgtt-acgttgctcgatagcacgatgagaagcatgccactttattcggagct |
47725280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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