View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_14 (Length: 441)
Name: NF13938_high_14
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 54917019 - 54917442
Alignment:
| Q |
18 |
ttttataaatggatcaataggtgacacggaagatataggaatttagtgagtagagccaggaaacaaatagaaataaatccatgagacaaacttaaagtca |
117 |
Q |
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| T |
54917019 |
ttttataaatggatcagtaggtgacacggaagatagaggaatttagtgagtagagccaggaatcaaatagaaataaatccatgagacaaacttaaagtca |
54917118 |
T |
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| Q |
118 |
ttgagtctttcaaccttattctaggtgggttttttatatgcgagtacacaggtgttgctttgacaaaagaacaaacacaaactttgactaggaaagtcgg |
217 |
Q |
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| T |
54917119 |
ttgagtctttcaaccttattttaggtggggtttttatatgcaagtacacaggtgttgctttgacaaaagaacaaacacaaactttgactaggaaagtcgg |
54917218 |
T |
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| Q |
218 |
tggtaactcgttaatatatccaaaacggtttttgaatactaggcaagagtaacaatgggatgatttatctatgatatgcgctaatcatgtgagttcctcc |
317 |
Q |
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| T |
54917219 |
tggtaactcgttaatatatccaaaacggtttttgaatactaggcaagattaacaatgggatgatttatctatgatatacgctaatcatgtgagttcctcc |
54917318 |
T |
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| Q |
318 |
tataatcatatcctcctttaggtttttctttggatatgtcaacaatgaggaatgtttctagcaatacaagtcagagaccaacttccaatgcgtttgttca |
417 |
Q |
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| T |
54917319 |
tataatcatatcctcctttaggtttttctttggatatgtcaacaatgaggaatgtttctagcaatacaagtcagagaccaacttccaatgcgcttgttca |
54917418 |
T |
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| Q |
418 |
gtttgatcaccataatttgaattt |
441 |
Q |
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| T |
54917419 |
gtttcatcaccataatttgaattt |
54917442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 308
Target Start/End: Original strand, 54911800 - 54911944
Alignment:
| Q |
163 |
acacaggtgttgctttgacaaaagaacaaacacaaactttgactaggaaagtcggtggtaactcgttaatatatccaaaacggtttttgaatactaggca |
262 |
Q |
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| T |
54911800 |
acacaggggttgttttgactaaggagcaagcacaaactttgactaggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatg |
54911899 |
T |
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| Q |
263 |
agagtaacaatgggatgatttatctatgatatgcgctaatcatgtg |
308 |
Q |
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| T |
54911900 |
gga-aaacaatgggatgatttgtttatgatacacgctaatcatgtg |
54911944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 54918059 - 54917986
Alignment:
| Q |
220 |
gtaactcgttaatatatccaaaacggtttttgaatactaggcaagagtaacaatgggatgatttatctatgata |
293 |
Q |
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| T |
54918059 |
gtaactcgttgatatatccataacgatttttgaatactaggtgggatgaacaatggggtgatttgtctctgata |
54917986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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