View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13938_high_16 (Length: 416)
Name: NF13938_high_16
Description: NF13938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13938_high_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 200 - 416
Target Start/End: Original strand, 2212622 - 2212838
Alignment:
| Q |
200 |
cccaatctttctcttgccgcctgattgactgatgcctcccattgaaggtcttattttgtggtttcaatcccttacatggcagtacgaaattagggaaaag |
299 |
Q |
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| T |
2212622 |
cccaatctttctcttgccgcctgattgactgatgcctcccattgaaggtcttattttgtggtttcaatcccttacatggcagcacgaaattagggaaaag |
2212721 |
T |
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| Q |
300 |
ttccttattgtgtggtctagcccagcccatctgtgaggcattgtgattttttcttccaaatattgagttagttcaacggaccccaagagttgagacgtca |
399 |
Q |
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| T |
2212722 |
ttccttattgtgtgatccagcccagcccatctgtgaggcattgtgattttttcttccaaatattgagtcagttcaacggaccccaagagtcgagacgtca |
2212821 |
T |
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| Q |
400 |
tccatgttatgcactct |
416 |
Q |
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| T |
2212822 |
tccatgttatgcactct |
2212838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 200 - 416
Target Start/End: Original strand, 2199960 - 2200169
Alignment:
| Q |
200 |
cccaatctttctcttgccgcctgattgactgatgcctcccattgaaggtcttattttgtggtttcaatcccttacatggcagtacgaaattagggaaaag |
299 |
Q |
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| T |
2199960 |
cccaatctttctcttgctgcctgattgactcatgcctcccattgaaggtcttgttctgtggtttcaatcccttaca-ggcagcatgaaatt-gggaaaag |
2200057 |
T |
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| Q |
300 |
ttccttattgtgtggtctagcccagcccatctgtgaggcattgtgattttttcttccaaatattgagttagttcaacggaccccaagagttgagacgtca |
399 |
Q |
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| T |
2200058 |
ttccttattgtgcgat-----ccagcccatctgtgaggcattgtatttttttcttccaaatattgagtcagttcaatggacctcgagagtcgagatgtca |
2200152 |
T |
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| Q |
400 |
tccatgttatgcactct |
416 |
Q |
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| T |
2200153 |
accatgttatgcactct |
2200169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 2212437 - 2212553
Alignment:
| Q |
16 |
aattatttatattgattagnnnnnnngagcttaattcgtatatttctggtttgcagggtgtaaaatgtggtatttatggtgccaattctgcagagtggat |
115 |
Q |
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| T |
2212437 |
aattatttatattgattagtttttttgagcttaattcgtatatttctggtttgcagggtgtaaaatgtggtatttatggtgccaattctgcagagtggat |
2212536 |
T |
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| Q |
116 |
tatgagcatggaggtac |
132 |
Q |
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| T |
2212537 |
tatgagcatggaggtac |
2212553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 2199780 - 2199892
Alignment:
| Q |
20 |
atttatattgattagnnnnnnngagcttaattcgtatatttctggtttgcagggtgtaaaatgtggtatttatggtgccaattctgcagagtggattatg |
119 |
Q |
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| T |
2199780 |
atttatattgattagtttttttgagcttaattcgtatatttctggtttgcagggtgtaaaatgtggtatttatggtgccaattctgcagagtggattatg |
2199879 |
T |
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| Q |
120 |
agcatggaggtac |
132 |
Q |
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| T |
2199880 |
agcatggaggtac |
2199892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 41932670 - 41932608
Alignment:
| Q |
70 |
agggtgtaaaatgtggtatttatggtgccaattctgcagagtggattatgagcatggaggtac |
132 |
Q |
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| T |
41932670 |
agggagtaaaatgcggcatttatggcgccaattgtccggaatggattatgagcatggaggtac |
41932608 |
T |
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